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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGgtaattgtcacttacattataaaaggcaatcccatgtgcatggtagtgttaatgtgaaattaaccttgtgctattgctcagttaaatgtaagacctaact...

Basic information

species Glycine max
transcript GLYMA01G01740.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G01740.2 (Glycine max), 5'ss of exon 3
lower sequence: Vv02s0012g02250.t01 (Vitis vinifera), 5'ss of exon 4
GCATATTCTCCTATACCTCCACATGGTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGgtaattgtcacttacat-----tataaaaggcaatcccatgtgcatggtagtgttaatgtgaaattaaccttgtgctattgctcagttaaatgtaagacctaact
||||||||||| |||||||||||||| |||||||| |||| |||||| ||||||||||| |||||||| || |||||| ||||  |||| ||     | | |  || |||   |  ||| |  | |  ||  |  ||    ||  |  ||  ||||   | |  | ||    | |  |  
GCATATTCTCCCATACCTCCACATGGGTTCTTGGCGTCAAGTCCCCAAGCTCACCCTTACATGTGGGGAGTTCAGgtatttgtt-cttatatgtttttctcatcggaaattgaaaatgcttatttggatttcttggaggagaaagtaatgggattg--tattggactgctcaaaccga--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21255865|gb|BQ452753.1|BQ452753
EST:     GTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAG                         CAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTAT
genomic: GTTTCTTGGCATCAAATCCCCAGGCTCACCCTTATATGTGGGGTGTCCAGgtaattgtca ... ttatcagcagCAATTTATGCCTCCCTATGGTACTCCACCACATCCCTATGTTGCAATGTAT