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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcatttctttctatttagcagtagtgtatgtacatcagattaacatctctctgaatttcag

Basic information

species Glycine max
transcript GLYMA01G00870.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os01g53680.1 (Oryza sativa), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcatt----tctttctatttagcagtagtgtatgtacatcagatt--------aacatctctctgaatttcag----
|||||| || ||  | || || || || || ||||||||||| ||||| |||||||||||||| || |||||||  ||||||||||| || || ||||||||  |  ||       || |  |||| |  |   |   ||  |   |||        || ||  || || | ||       
TGATATCCACAAAAGAGGTGGCACAGTTCTGGGAACATCACGGGGTGGTCATGACACCAAAAAAATTGTTGACAACATTCAAGATCGTGGTATTAATCAGgtaggtgttgtaactatttttcttagtataataatccttattttgaattttgggtaaaatatgcctgtgtactttgtctag

upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 6
lower sequence: LOC_Os05g44922.1 (Oryza sativa), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtc--tgcatttctttctattta-gcagtagtgtatgtacatcagattaacatctctctgaatttcag------------
||| || || ||| | || || || || || || |||||||||||||| ||||| || |||||||| |||||||  ||||| ||||| ||||| ||||||||   |||  || |||  |  || |   ||  |    |      | | |   ||||  ||   ||  |            
TGACATCCACAAGAGGGGTGGGACAGTTCTTGGCACATCACGAGGTGGCCATGATACAAAAAAGATTGTTGACAACATTCAGGATCGTGGAATTAATCAGgtaaatgcggttgtttgcacctatgtgatatagctcttctgattggtcattgtctca-tgtgcttatgtacattacccag

upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G879882_T03 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcattt------------ctttctatttagcagtagtgtatgtacatcagattaacatctctctgaatttcag----
|||||| || || || || || || || || ||||||||||||||||| ||||| ||||||||||| |||||||  ||||||||||| ||||| |||||||| ||   ||             | | |   || |  |  | | || |  |    | ||  |   |||  |   ||     
TGATATCCACAAACGAGGTGGTACAGTTCTTGGAACATCACGAGGTGGCCATGATACCAAAAAGATTGTTGACAACATTCAAGATCGTGGAATTAATCAGgtatgtgcttgctgattagtgtttctttgcataacccttattt-tggaggttgagtaaatgttcttctttaccacatctag

upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM5G816636_T02 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcatttc----tttctatt-tagcagtagtgtatgtacatcagat-taaca-tctctctgaatttcag---------------------------------------------------------------------------
||| || || ||  | || |||||||| |||||| |||| ||||| || |||||||||   ||||||||||||||||| |||||||| || || ||||||||        |    |  | ||| ||    || | | | |   |   || || || ||| ||| | || | |                                                                           
TGACATTCACAAAAGGGGTGGAACTGTTCTCGGATCATCTCGAGGAGGCCATGACACCGTGAAGATAGTTGACAGTATCCAAGATCGTGGCATAAATCAGgtaaatgaaacaaaataacaattatactcttaatctttttctcttttatgtatcactctgtcttatttcctggcactgtgaagactcttttaccaaggtttgacacttaaactttcacattggtttaactctgattatttgtttcag

upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 6
lower sequence: GRMZM2G004932_T01 (Zea mays), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcatttctttctatttagcagtagtgtatg-tacatcagatt--aacatctctctga-atttcag--------------
||| || || ||  | || || || || || ||||||||||| ||||| ||||| ||||||||||| ||||| |  ||||||||||| |||||||| |||||   |||   |     | | |   ||    ||    | || ||||  |  |  |  |||| ||   ||              
TGACATCCACAAAAGGGGTGGTACAGTTCTTGGAACATCACGCGGTGGCCATGATACCAAAAAGATTGTTGATAACATTCAAGATCGTGGAATCAACCAGgtaaacatgattgcacctattgatataacacataactcttctgattggagaagttgactgatatactagagcgccttatccag

upper sequence: GLYMA01G00870.1 (Glycine max), 5'ss of exon 6
lower sequence: Vv11s0016g02850.t01 (Vitis vinifera), 5'ss of exon 6
TGATATACATAAGCGTGGGGGAACTGTCCTCGGAACATCACGAGGTGGACATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcatttctttctatttagcagtagtgt-atgtacatcagattaacatctctctgaatttcag-------------------------------------------------------------
|||||| ||||| |||||||||||  | || || |||||||||||||| ||||| |||  ||||||||||||||||||||| ||||| ||||||||||||||||| |     | ||||||         || || |   ||| | |  |     | ||  | |  |                                                             
TGATATTCATAAACGTGGGGGAACCATACTTGGGACATCACGAGGTGGCCATGATACCTCAAAGATAGTTGACAGTATTCAGGATCGTGGAATCAATCAGgtctgtagacaatactatttcttgtccaagttatctgagtcacactttcggagttttgtgtatttgctacacctgggcacacctcttcaatgcatggacgttagatttatagctttgttgatctcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7691740|gb|AW759862.1|AW759862
EST:     ATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAG                         GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTT
genomic: ATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcattt ... tgaatttcagGTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTT
EST: gi|10237267|gb|BE806155.1|BE806155
EST:     ATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAG                         GTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTT
genomic: ATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcattt ... tgaatttcagGTTTATATAATTGGAGGAGATGGAACTCAGAAGGGTGCATCTGCAATTTTT
EST: gi|208272742|gb|GE066234.1|GE066234
EST:     ATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAG                         GTTTATATAATTGGAGGAGATGGAACTCAGAAGG
genomic: ATGACACCAAAAAGATAGTTGACAGTATTCAAGATCGGGGAATCAATCAGgtctgcattt ... tgaatttcagGTTTATATAATTGGAGGAGATGGAACTCAGAAGG