1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' |
GTAAGAGATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacagaaaatttactccgaatttgtcttttgccttcattttattttctattaccataataattgatttatattcttttgcaacatttttttttga...
species | Glycine max |
transcript | GLYMA16G30190.2 |
intron # | 29 |
splice site | 5' |
intron type | U2 |
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|9204949|gb|BE331173.1|BE331173
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|7233777|gb|AW569120.1|AW569120
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|18720655|gb|BM523266.1|BM523266
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|6227802|gb|AW156401.1|AW156401
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTEST: gi|14126584|gb|BG791022.1|BG791022
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATT
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|7146673|gb|AW508595.1|AW508595
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|7691707|gb|AW759830.1|AW759830
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|14999959|gb|BI320773.1|BI320773
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|19348791|gb|BM893323.1|BM893323
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|10233815|gb|BE802703.1|BE802703
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTAEST: gi|254334421|gb|GR844206.1|GR844206
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
EST: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAA TCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAG-TTTA
genomic: AAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacag ... ttccttgcagTCAGAATATCCAAAGTACACTCCATTACTTGCAACGATTTTGGAAGGTTTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTAAGAGATGCAAAAATAAAAGTTCTAGCAAGCCTAAAACAAGAAACTGATGAAGAGCGTTTGGAGTGGAAAGAGCTATCTGCCTTGCTTAAAgtcagtacagaaaatttactccgaatttgtcttttgccttcattttattttctattaccataataattgatttatattcttttgcaacatttttttttga
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT