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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTAAGCCAAAGCAAGACGCTGTCAAGCAAGAAGTAGATCGCAATGAAGACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatttgacctgtttgtgacccaaattacttgtcttccgctgaggctaaataaatcaaatgaaaaggtaatagtaaaattaatgcctttctgaga...

Basic information

species Glycine max
transcript GLYMA07G40230.1
intron # 29
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 29
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 28
ATTTTAAGCCAAAGCAAGACGCTGTCAAGCAAGAAGTAGATCGCAATGAAGACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatttgacctgtttgtgacccaaattacttgtcttccgctgaggctaaataaatcaaatgaaaaggtaatagtaaaattaatgcctttctgaga----
||   || || |||   || || || |||||||| || ||||||||||||||||||||||||||||| || ||||| || ||  |  | | |||||||||||  |  ||     ||||   || ||| ||  |||| | ||| | |    | | |    | || ||    |  |    |    ||| |        |  |    
ATCACAAACCCAAGGGCGATGCAGTGAAGCAAGAGGTTGATCGCAATGAAGACATGATTCGAAGTGCTCTTCGAGCAATCGCTGCTCTAAGCCGCATAAGgtcaggcatc-attctgtcc-tgccccgaac-actttttttctggtttaaccacactt-ttaactgtgctgtcatctttctcgttattagtgaatcgccacatc

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 29
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 29
ATTTTAAGCCAAAGCAAGACGCTGTCAAGCAAGAAGTAGATCGCAATGAAGACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgt-ttgtaatttgacctgtt-tgtgacccaaattacttgtcttccgctgaggctaaataaatca--aatgaaaaggtaatagtaaaattaatgcctttctgaga--
||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||| |||||||||| ||| ||    |   ||| | ||| | |||   |||   ||  | |     | || |   |   |   |    ||  |  |  |||  ||   | |   |    
ATTTTAAACCAAAGCAAGATGCTGTCAAGCAAGAAGTAGATCGTAATGAAGACATGATTCGAAGTGCTCTTCGAGCGATTGCATCCTTGAATCGCATAAGgtattggaa---aattcgttatatgaacgaaa---ctttctttttggtagaattgaacactgcgtcatctactttgtcgtgttttaatatataattataaaaacat

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 29
lower sequence: PP1S337_6V6.1 (Physcomitrella patens), 5'ss of exon 27
-ATTTTAAGCCAAAGCAAGACGCTGTCAAGCAAGAAGTAGATCGCAATGAAGACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatttgacctgtttgtgacccaaattacttgtcttccgctgaggctaaataaatcaaatgaaaaggtaat--agtaaaattaatgcct-ttctgaga----
 |    || | |||||  || ||||| |||||||| || |||||||||||||| ||||| |||||||| || || || ||||  ||  | || || |||||||  ||   |||     | | |    ||  |||| ||   |   |||   |||||  |||    |       |  |  |||| | ||||||  | |||||||     
AACACAAAACGAAAGCT-GATGCTGTGAAGCAAGAGGTTGATCGCAATGAAGATATGATCCGAAGTGCTCTTCGTGCAATTGACTCACTAAATCGGATAAGgtaggt---ttg---catatctagtgcatgttacatgaagtat-ctgcatctaaaggaatttgcttggcctttcctcaagtagagttaatgagtattctgaggaaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15199998|gb|BI424117.1|BI424117
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... cattatgcagTGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
EST: gi|208219503|gb|GE020587.1|GE020587
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAGGAGATTGCAGTGTCAAGTTCAAGAAATCTTATGAACGAAATATCAA
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... cattatgcagTGGAGGAGATTGCAGTGTCAAGTTCAAGAA-TCTTATGAACGAAATATCAA
EST: gi|207681336|gb|GD661411.1|GD661411
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... cattatgcagTGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
EST: gi|7285013|gb|AW597500.1|AW597500
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... cattatgcagTGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
EST: gi|193664153|gb|FK609979.1|FK609979
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... cattatgcagTGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
EST: gi|151410822|gb|EV280637.1|EV280637
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TG-AGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAA-TATCAAA
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... cattatgcagTGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
EST: gi|20812570|gb|BQ297048.1|BQ297048
EST:     GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAG                         TGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA
genomic: GACATGATTCGAAGTGCACTCCGAGCTATTGCATCCTTGAACCGCATAAGgtttgtaatt ... cattatgcagTGGAGGAGATTGCAGTGTCAAGTTCAAGAATCTTATGAACGAAATATCAAA