Sequence
atgc intronic sequence ATGC exonic sequenceTGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACCAGgtatgttcattcagttaaatattatatcattgagggattgcttggggggctagagttctcagatttttggttttaagaggcacaatatttcagtattaaa...
Basic information
species | Glycine max |
transcript | GLYMA06G16110.2 |
intron # | 29 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA06G16110.2 (Glycine max), 5'ss of exon 29
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 5'ss of exon 29
TGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACCAGgt-----atgttcattcagttaaatattatat-cattgagggattgcttggggggctagagttctcagatttttggttttaagaggcacaatatttcagt-attaaa-
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TTTCTGAGCTGGAGATGCTCTTTGGGAGGCTCTGGACGCAGTGCCAGGAGTGCCAAGGCTCCCTTCATCAGGACGTTCTCTGCACAAGgtttgccatttttctcccattcaacaatttgtacatttcag--ttgcatgttagctataagcttcttgatccacaagctttaaatttatgttggtgcaatgatcgcag
upper sequence: GLYMA06G16110.2 (Glycine max), 5'ss of exon 29
lower sequence: GRMZM2G115245_T01 (Zea mays), 5'ss of exon 13
TGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACCAGgtatgtt-cattcagttaaatattatatcattgagggattgcttggggggctagagttctcagatttttggttttaag-aggcacaatatttcagtattaaa
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TTTCTGACCTGGAGATGCTCTTTGGGAGGCTATGGACACAATGCCAGGAGTGCCAAGGATCTCTGCACCAGGACGTTCTCTGCACAAGgtttgctgctttcccctcaatccaacacctgctc---attacttgg----ttccagtcacaagattaaaactcgtatgcaatcgaaccactgcag-------
upper sequence: GLYMA06G16110.2 (Glycine max), 5'ss of exon 29
lower sequence: AT5G63960.2 (Arabidopsis thaliana), 5'ss of exon 29
TGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACCAGgtatgttcattcagtta--aatatta-tatcattgagggattgcttggggggctagagttctcagatttt-tggttttaagaggcacaatatttcagtattaaa-
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TGGCTGAGCTTGAAGAGGTTTTTGGGAGGCTGTGGACACAGTGCCAGGAGTGTCAAGGCTCTCTTCATCAAGATGTCTTGTGCACCAGgtttgcttatatttttatcgatatcaatttcttttagaaatctttcagcaggtaaataggttctgatccaatttcctttctggatttcttattggtcttttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193727254|gb|FK666250.1|FK666250EST: CAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACCAG TCGGGATTGTCCAATTTTCTATCGACGAAAAAAGGCACAGAAAGATATGGG
genomic: CAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACCAGgtatgttcat ... ggtgttgcagTCGGGATTGTCCAATTTTCTATCGACGAAAAAAGGCACAGAAAGATATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCTGAGCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACCAGgtatgttcattcagttaaatattatatcattgagggattgcttggggggctagagttctcagatttttggttttaagaggcacaatatttcagtattaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggggg