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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCTATTTGTTTGCTATGATCTCATACGGGCAGACATTGTTCTTGAACTAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGgtttgcatttgttttatgctgctaatttgtatcacctgtagttagaattttatgtttcatgattcaatgtgattcagctagctattgatttgtatcataa...

Basic information

species Glycine max
transcript GLYMA14G06340.1
intron # 28
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 28
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 28
ATGTCTATTTGTTTGCTATGATCTCATACGGGCAGACATTGTTCTTGAACTAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGgtttgcatttgttttatgctgctaatttgtatcacctgtag---ttagaattttat--gtttcatgattcaatgtgattcagctagctattgatttgtatcataa
|||||| ||||| || |||||  | || ||  ||||| ||| ||| ||||| ||||||||  |||||||||| |||||||||||||| |||||  | |||||      |  |   || |    |||       |||||  |   |  |||   ||        |||||  | | |  || | |  |  |||  |||   ||| | 
ATGTCTCTTTGTCTGTTATGACTTAATCCGACCAGACGTTGCTCTAGAACTTGCTTGGATCAACAATATGATCGACTTTGCCTTCCCGTATCTCCTCCAGgtaatttatcctccaatccctaaaataccctctacctgatgagataggaaccatactgacgctatgatcaactctctttgatcccgtcatt--ttttcttcacag

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 28
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 28
ATGTCTATTTGTTTGCTATGATCTCATACGGGCAGACATTGTTCTTGAACTAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGgtttgcatttgttttatgctgctaatttgtatcacctgtagttagaattttatgtttcatgattcaatgtgattcagctagc-tattgatttgtatcataa--
 || || ||||| ||||| ||  | || ||  ||||||||| ||||||||| || |||||  |||||||| ||||||||||||| |||||||| ||||||||    || |||||  | || |   | |   || | | || |  |||||||| |    |   |    || || |   | ||| | | |   | | | | |   
TTGCCTCTTTGTGTGCTACGACTTAATTCGTCCAGACATTGCTCTTGAACTTGCCTGGATTAACAATATGGTTGACTTTGCCTTGCCATATCTGTTGCAGgtg---atctgtttgcttcttcccttgtcattctcatatattaggaattttaggagggaaattagcttgcgactttcccagcctgtgggccttttttagagct
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7588895|gb|AW704681.1|AW704681
EST:     TAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAG                         TTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
genomic: TAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGgtttgcattt ... ggggttgtagTTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
EST: gi|151406151|gb|EV275966.1|EV275966
EST:     TAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAG                         TTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
genomic: TAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGgtttgcattt ... ggggttgtagTTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
EST: gi|254320762|gb|GR827211.1|GR827211
EST:     CACAATATGATTGACTTTGCCTTCCCATATCTATTGCAG                         TTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
genomic: CACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGgtttgcattt ... ggggttgtagTTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
EST: gi|6719249|gb|AW306896.1|AW306896
EST:     TGCCTTCCCATATCTATTGCAG                         TTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
genomic: TGCCTTCCCATATCTATTGCAGgtttgcattt ... ggggttgtagTTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
EST: gi|7924533|gb|AW830559.1|AW830559
EST:     TAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAG                         TTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
genomic: TAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGgtttgcattt ... ggggttgtagTTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
EST: gi|26047482|gb|CA784260.1|CA784260
EST:     TAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAG                         TTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT
genomic: TAGCTTGGATGCACAATATGATTGACTTTGCCTTCCCATATCTATTGCAGgtttgcattt ... ggggttgtagTTTATTCGTGAGTACACTGGCAAAGTCGATGAACTAGTGAAGGACAAAATT