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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCTCTTTGTCTGTTATGATATTATATGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTTCCATATCTCTTGCAGgtatggatttgtttgtggttatatttatcaacagatgaaatatattctttttttgctaaacattttgaaatttatttttgtttgaag

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 28
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 28
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 28
ATGCCTCTTTGTCTGTTATGATATTATATGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTTCCATATCTCTTGCAGgtatggatttgtttgtggttatat-ttatcaacagatgaaatatattctttttttgctaaacattttgaaatttatttttgtttgaag
 || |||||| | ||||||||  | ||  |  | ||||||||||||||||| || ||||||||||| ||| | || ||||| || || ||||| || |||||||    ||||||  | | || | ||    ||   | |  ||  | |  ||||   |||  |     |||  |   ||  | || ||
TTGTCTCTTTATTTGTTATGACTTGATCCGTGCGGATGTTGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCATTCCCCTATCTGTTACAGgtat---cttgtttccgttcatgtgtttgggactattcatttacgtacagttttccataacaac----aaagcttgcttcatgtgcag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 28
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 28
ATGCCTCTTTGTCTGTTATGATATTATATGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTTCCATATCTCTTGCAGgtatggatttgtttgtggttatat-ttatcaacagatgaaatatattctttttttgctaaacattttgaaatttatttttgtttgaag
 || |||||| | ||||||||  | ||  |  | ||||||||||||||||| || ||||||||||| ||| | || ||||| || || ||||| || |||||||    ||||||  | | || | ||    ||   | |  ||    |  ||||   |||  |     |||  |   || || || ||
TTGTCTCTTTATTTGTTATGACTTGATCCGTGCGGATGTTGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCATTCCCCTATCTGTTACAGgtat---cttgtttccgttcatgtgtttgggactattcatttacgaacagttttccataacaac----aaagcttgcttcgtgtgcag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 28
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 5
ATGCCTCTTTGTCTGTTATGATATTATATGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTTCCATATCTCTTGCAGgtatggatttgtttgtggttatatttatcaacagatgaaatatattctttttttgctaaacattttgaaatttat-ttttgtttgaag
 ||||||||  | || || ||  | ||  |||| ||||| ||||||||||| || ||||||||||| ||| | || ||||| || ||||| || |||||||||   | ||  || ||   |||| |  |    | |||  | | ||  | | |   | |  ||  | | ||  ||  |  || || ||
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCGTGGATGAACAACATGTTGGACTTTGCCTTCCCATACCTGTTGCAGgta---acttacttctgtccatatctgac----ggtgatgtttgtttatgtataatttactatggtaacatccatgctgcgtgtgcag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 28
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 26
ATGCCTCTTTGTCTGTTATGATATTATATGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTTCCATATCTCTTGCAGgtatggatttgtttgtggttatatttat-----caacagatgaaatatattctttttttgctaaac----attttgaaatttatttttgtttgaag
 ||||||||  | || || ||  | ||  |||||||||| ||||||||||| || ||||||||||| ||| | || ||||| || || || || ||||||||| | | |  ||| ||   || ||  |     |  |   | | ||| | | |    | |  | |     | | ||  || |   | |||  | ||
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCAGATGTGGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagtttaccatagtaacatctctactgtgctatgtgactgtgtgcgcag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 28
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 28
ATGCCTCTTTGTCTGTTATGATATTATATGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTTCCATATCTCTTGCAGgtatgg-atttgttt-gtggttatatttatcaacagatgaaatatattctttttttgctaaacattttgaaatttatttttgtttgaag
|||||||||||||||||| ||| | ||  ||||||| ||||  |||||||| || ||||||||||||||||| || ||||| || ||||||||||| ||||||    ||||||||     || |  |  |   |     ||   | ||| |||| |   || || |      || |||||| ||   ||
ATGCCTCTTTGTCTGTTACGATTTAATTCGGCCAGACGTTGTCCTTGAGCTTGCATGGATGAACAATATGATCGACTTTGCCTTCCCATATCTCTTACAGgtaaactatttgtttcacccttgttctatttggctttcaaatcgtcttcattttctctcaaccact-----gttcattttttttcatag