Sequence
atgc intronic sequence ATGC exonic sequenceTGGTCTGTTTCCCGAGGAACAATGGATGCTGTCTTAGCTTGCCATGCTGGGCCAATATTATGTGTTGAGTATTCTTCTTTAGACAGAGGAATAATTACAGgtgcgtcatctccaattttttgctatgctgccatttggtatcttttattttgttggttcttgggcttgcttgaagagaaatttccactgtgcttttatatccagtgcttactaaaatgttaaatttccattctag
Basic information
species | Glycine max |
transcript | GLYMA08G04510.1 |
intron # | 28 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G04510.1 (Glycine max), 5'ss of exon 28
lower sequence: LOC_Os01g39380.1 (Oryza sativa), 5'ss of exon 29
TGGTCTGTTTCCCGAGGAACAATGGATGCTGTCTTAGCTTGCCATGCTGGGCCAATATTATGTGTTGAGTATTCTTCTTTAGACAGAGGAATAATTACAGgtgcgtcatctccaattttttgctatgctgccatttggtatcttttattttgttggttcttgggcttgcttgaagagaaatttccactgtgctttt-atatccagtgcttactaaaatgttaaatttccattctag
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TGGTCTCTTACCCGAGGAACATGTGACGCTGTGTTAGCATGCCATGCTGGCCCAATACTCTGTGTTGAGTACTCACCCTCAGATAAAGGAATCATCACGGgtatgtgaccattgcttattttaaaactggggagatgagctctatcacatatcca----ctgtactctacagtattcatcatcaaataatgctcttcatgtcaaatg---agtctgatccttaattaacatcccag
upper sequence: GLYMA08G04510.1 (Glycine max), 5'ss of exon 28
lower sequence: Vv17s0000g03950.t01 (Vitis vinifera), 5'ss of exon 28
TGGTCTGTTTCCCGAGGAACAATGGATGCTGTCTTAGCTTGCCATGCTGGGCCAATATTATGTGTTGAGTATTCTTCTTTAGACAGAGGAATAATTACAGgtgcgtcatctccaattttttgctatgctgccatttggtatctttt--attttgttggttcttgggc----ttgcttgaagagaaattt--ccactgtgcttttatatccagtgcttactaaaatgt-taaat---------ttccattctag
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TGGTCTGTTTCACGAGGTACATGTGATGCTGTTCTAGCTTGCCATGCTGGTCCAATTTTATGTGTTGAGTATTTGATGTCAGACAGAGGAATAATAACAGgt-taacaccttgtcttttgcatttttctgtagtctttcatcttttttactttggcacttcaaagacatttctgttcagtggcagatttatccctggtgctaatgtgagcaattttataaatagtgtctgaataaggatatccttcttttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151409550|gb|EV279358.1|EV279358EST: GCCAATATTATGTGTTGAGTATTCTTCTTTAGACAGAGGAATAATTACAG GGTCCACTGATGGCCTGCCACGTTTTTGGGAAAATGATGATG
genomic: GCCAATATTATGTGTTGAGTATTCTTCTTTAGACAGAGGAATAATTACAGgtgcgtcatc ... tccattctagGGTCCACTGATGGCCTGCTACGTTTTTGGGAAAATGATGATG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGTCTGTTTCCCGAGGAACAATGGATGCTGTCTTAGCTTGCCATGCTGGGCCAATATTATGTGTTGAGTATTCTTCTTTAGACAGAGGAATAATTACAGgtgcgtcatctccaattttttgctatgctgccatttggtatcttttattttgttggttcttgggcttgcttgaagagaaatttccactgtgcttttatatccagtgcttactaaaatgttaaatttccattctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA