Sequence
atgc intronic sequence ATGC exonic sequenceGCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttctatttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac...
Basic information
species | Glycine max |
transcript | GLYMA07G00630.1 |
intron # | 28 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 25
lower sequence: LOC_Os02g08010.1 (Oryza sativa), 5'ss of exon 9
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgt---aggtgttcta-tttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac
|| || ||||||||| ||||||| ||||||||||| ||||| || ||||||||||||||||| || || || || || || ||||| ||||| |||||||| | ||| | |||||| | || || | | || ||| || | || | |||| | | |
GCAGACATTGGTCTTGCTATGGGTATCCAAGGAACAGAAGTAGCTAAAGAAAGCTCAGATATAATTATTCTGGATGACAATTTTGCTTCAGTTGTAAAGgttagggaagttggagcttaataatcttacacaattaatttaacaaatgccttaacatttatccatat-------gtaacgttctag-----------------
upper sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 25
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 5'ss of exon 26
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttctatttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac
|| ||||| ||||| || ||||||||||| |||||||||||||| || || || || |||||||| ||| | || || || |||||||| || || | |||| || || | | | || | | ||| |||| ||| | | ||| || ||
GCAGATATAGGTCTCTCCATGGGCATCCAGGGAACTGAAGTTGCCAAGGAGAGTTCTGATATTATCATCTTGGATGACAATTTTGCATCGGTCGTGAGGgtatgtacactgtgt--tctgttattggccttc--catgactgcaacttatagtattcttttctctcgcttttag-------------------------
upper sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G893864_T01 (Zea mays), 5'ss of exon 5
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttctatttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac
|| |||||||||||||||||||||||||||||||| ||||| || ||||| |||||||| || ||||| || || || || ||| | || || || ||||| || |||||| || | ||| ||| | || ||| | | | | | | | || | || || | | | ||
GCAGATATTGGTCTTTCTATGGGCATCCAAGGAACAGAAGTAGCCAAAGAGAGCTCAGACATAATAATTCTGGATGACAATTTTTCTTCTGTTGTGAAGgtt--tggcctatttt-tagaatctaaggatcttg-ataatacgcgcacatgcctaatacaacgttgtcttacatgttcttta-tcttttatattctag-
upper sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G140328_T03 (Zea mays), 5'ss of exon 26
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggt---gttctatttaatacattctcaggcttggatatgatattgtcttcc-------gtttcctgtatcttctcctagtaaa---------ttgttgggtaatcaacgctcccac----------------------------------------------------------------------------
|| ||||||||||| || |||||||| || |||||||||||||| || || || || |||||||| ||| | || || || || |||||||| || | |||| || | ||| || | | || | | | ||| || || | || | || ||| | | | ||| | ||||| || | |||||
GCAGATATTGGTCTATCAATGGGCATTCAGGGAACTGAAGTTGCCAAGGAGAGTTCTGATATTATTATCTTGGATGACAATTTCGCATCAGTCGTGAGGgtacgttaaggactagtttgggaacac-cattttcccaaaggattttaattttccaagggaaattagttcattttcccttgggaaaaatagaaatctcttgggaaaattgagttcccaaactagccctaaatgtgtttatatttttttgttagccttctgctactgtagttcatggtgtttgtttctggcttcag
upper sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 25
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 5'ss of exon 27
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttctatttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac------
|| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||| || || ||| | || ||||||||||| ||||| |||||||| |||| | || |||| | | || || | | | || || | | | || ||| | | || || ||
GCAGATATAGGTCTCTCTATGGGCATTCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGACATCATTATCTTGGATGATAACTTTGCCTCAGTTGTAAAGgttagtgt---aagcaaaccatttatgtgagtaaat-tgtcttgggaatttgtagttatgattctaccttgttatatt--taaaacaaaaatactgtcaatccttt
upper sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 25
lower sequence: EFJ22392 (Selaginella moellendorffii), 5'ss of exon 22
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttctatttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac
|||||||| |||||||| |||||||||||||| || || || || |||||||||||||| |||||||| || || || ||||||||||| || || |||||| | | || | || || || | | | | |
GCTGATATCGGTCTTTCAATGGGCATCCAAGGGACCGAGGTGGCCAAAGAAAGCTCAGACATTATAATTCTGGATGACAACTTTGCATCTGTTGTCAAGgtaagataacagctt---ttggtgcgagtctgaaggatcgaaattcttgcag------------------------------------------------
upper sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 25
lower sequence: EFJ08462 (Selaginella moellendorffii), 5'ss of exon 23
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttctatttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac
|| ||||||| || || ||||| || ||| |||||||| ||||| ||||||||||| ||||| || || || ||||||||||| || || || || ||| | ||| | || | || | ||| | | | | | | | |
GCACATATTGGGCTATCCATGGGAATTATAGGCACTGAAGTCGCAAAGGAAAGCTCAGACATTATTATTCTGGATGATAACTTTGCGTCGGTTGTCAAAgtaagc--tctttgtatttttttttatatcttacaagtaaaacattttataaatgtgtag----------------------------------------
upper sequence: GLYMA07G00630.2 (Glycine max), 5'ss of exon 25
lower sequence: EFJ15121 (Selaginella moellendorffii), 5'ss of exon 21
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttctatttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac
|| ||||||| || || ||||| || ||| |||||||| ||||| ||||||||||| ||||| || || || ||||||||||||||||| || || ||| | ||| | | | || | ||| | | | | | | | |
GCACATATTGGGCTATCCATGGGAATTGTAGGCACTGAAGTCGCAAAGGAAAGCTCAGACATTATTATTCTGGATGATAACTTTGCATCAGTTGTCAAAgtaagc--tctttgtgtttttttttatatcttacaagttacacattttataaatgtgtag----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33390180|gb|CA853387.1|CA853387EST: AAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAG GTTGTCCGATGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAG
genomic: AAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttc ... ctttgtgtagGTTGTCCGATGGGGCCGCTCTGTATATGCAAATATTCAGAAATTTATCCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCTGATATTGGTCTTTCTATGGGCATCCAAGGAACTGAAGTTGCAAAAGAAAGCTCAGATATTATAATCCTAGACGATAACTTTGCATCAGTGGTAAAGgtaggtgttctatttaatacattctcaggcttggatatgatattgtcttccgtttcctgtatcttctcctagtaaattgttgggtaatcaacgctcccac
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA