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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCAAGTGAAGATGCTGAGTATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagagcttcttctcaccctaaagaagatgtctttgtgatgcaccacataatttcttagataacttgaattgagttcacttttgtcctataaaactttgttttcttggtatgtaatgggtgatttggtgtttttattacgtag

Basic information

species Glycine max
transcript GLYMA02G05240.1
intron # 28
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308097944|gb|HO761115.1|HO761115
EST:     ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: gi|58024762|gb|CX711503.1|CX711503
EST:     ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: gi|15337287|gb|BI497943.1|BI497943
EST:     ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: gi|58021123|gb|CX707865.1|CX707865
EST:     ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: gi|51338433|gb|CO982299.1|CO982299
EST:     ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: gi|209712388|gb|BW671240.1|BW671240
EST:     CCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: CCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: gi|31456087|gb|CD398115.1|CD398115
EST:     ATTCAACTCTTACCCAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATC
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATC
EST: gi|58017781|gb|CX704523.1|CX704523
EST:     ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: gi|192326055|gb|FK016222.1|FK016222
EST:     ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTTAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
EST: gi|15285854|gb|BI469745.1|BI469745
EST:     ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACG                         ATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA
genomic: ATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagag ... tattacgtagATAAAGGAGTTGAAGGAGGTAAGTTTGTCATCTAACCAAGAGAAGTCAGAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCAAGTGAAGATGCTGAGTATTCAACTCTTACCAAAGTTGAACTAAAGAAGTTGTTTGCCATGAAAACGgtatatagagcttcttctcaccctaaagaagatgtctttgtgatgcaccacataatttcttagataacttgaattgagttcacttttgtcctataaaactttgttttcttggtatgtaatgggtgatttggtgtttttattacgtag

- - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - AGAAGT