Sequence
atgc intronic sequence ATGC exonic sequenceGTTAAGGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCCATTGCAAGTTGGCATgtatgttttgcaatcatcattgtccatcttaaaagttagaagtgctttaaggtttctgtaatataactgcttttattaacgtctatag
Basic information
species | Glycine max |
transcript | GLYMA20G24040.1 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 27
lower sequence: AT2G16950.2 (Arabidopsis thaliana), 5'ss of exon 27
GTTAAGGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCCATTGCAAGTTGGCATgtatgtt--ttgcaatcatcattgtccatcttaaaagttagaa--gtgctttaaggtttctg--taata------taactgcttttattaacgtctatag
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GTTAAAGTGAATCCATCAGGAGGTGTCAGCTCACTTGTTTTCATATGCCAAGCCATTGCGAGTTGGCATgtaagtgaacagaaaccaaactgtgctaaattcaatattgttaccgagctttggaacaattgattgatacacaaataacaaccttttttttaatc-acag
upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 27
lower sequence: Vv18s0001g00910.t01 (Vitis vinifera), 5'ss of exon 27
GTTAAGGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCCATTGCAAGTTGGCATgtatgttttgcaatcatcattgtccatcttaaaagttagaagtgctttaaggtttctgtaatataactgcttttattaacgtctatag-
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GTTAGAGCAAATCCATCTGGGGCTTTGAGTTCACTTGTGCACATGTGCAAAGCTATTGCAAGTTGGCATgtaagcttgggaa--gtgatagat-acctgagagtcgattcattcctttttcttttttctttatt-ctgatattattcttgtctgccag
upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 27
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 5'ss of exon 27
GTTAAGGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCCATTGCAAGTTGGCATgtatgttttgca--atcatcattgtcca-------tcttaaaagttagaagtgctttaaggtttctgtaatat--aactgcttttattaacgtctatag--
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GTTAGAGCAAATCCATCTGGCGCCCTTAGTTCACTTGTTTACATGTGCAAAGCTATTGCAAGTTGGCATgtaagaatagcattatcatagtcttcaaaacttttttctgataggtaaaag-gaaacagtataaataaaatgtcaaaaagggcgcaccaaagtacacaggaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254314126|gb|GR831755.1|GR831755EST: GAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCCATTGCAAGTTGGCAT GAAATAAGGAGTGAAGATTTACACAATGAAGTCTGCCAGGTCTTACATGGG
genomic: GAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCCATTGCAAGTTGGCATgtatgttttg ... acgtctatagGAAATAAGGAGTGAAGATTTACACAATGAAGTCTGCCAGGTCTTACATGGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAAGGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAAGCCATTGCAAGTTGGCATgtatgttttgcaatcatcattgtccatcttaaaagttagaagtgctttaaggtttctgtaatataactgcttttattaacgtctatag
- - - - - - - - - - - - - - - - - - - - - - - GCAAAG