Sequence
atgc intronic sequence ATGC exonic sequenceTGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGGtttgtattccttctgtgctgcttacttttattacttaaacatacatcgacatgtattatttctttttcaacattttatctagtgcttttttttaattaattgtcttcttctttcgctgatgtagt
Basic information
species | Glycine max |
transcript | GLYMA18G02960.1 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 27
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 28
-TGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGGtttgtattccttctgtgctgcttacttttattacttaaacatacatcgacatgtattatttctttttcaacattttatctagtgcttttttttaattaattgtcttcttctttcgctgatgtagt
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ATGTCTCTTTGTATGTTATGACTTAATCCGACCAGACGTGGCTCTAGAACTTGCCTGGATCAACAATATGATGGACTTTGCCTTCCCGTATCTCCTCCAGgtgatctatcctaaccctcaaataaactcttttgattctctgctcaatgaggt-tggaaccattatttgaacgctatgatgaattctcttcttc---ctgtcgttttttctttgcag---------
upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 27
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 28
-TGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGGtttgtattccttctgtgctgcttacttttattacttaaacatacatcgacatgtattatttctttt-tcaacattttatctagtgcttttttttaattaattgtcttcttctttcgctgatgtagt
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ATGTCTCTTTGTCTGTTATGACTTAATCCGACCAGACGTTGCTCTAGAACTTGCTTGGATCAACAATATGATCGACTTTGCCTTCCCGTATCTCCTCCAGgtaatttatcctccaatccctaaaataccctctacctgatgagataggaac-catactgacgctatgatcaactctctttgatcccgtcattttttcttcacag-----------------------
upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 27
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 28
-TGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGGt--ttgtattccttctgtgctgcttacttttattacttaaacatacatcgacatgtattatttctttttcaacattttatctagtgcttttttttaattaattgtcttcttctttcgctgatgtagt
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TTGCCTCTTTGTGTGCTACGACTTAATTCGTCCAGACATTGCTCTTGAACTTGCCTGGATTAACAATATGGTTGACTTTGCCTTGCCATATCTGTTGCAGgtgatctgtttgcttcttcccttgtcattctcatatattaggaattttaggagggaaattagcttgcgactttcccagcctgtgggccttttttagagct----------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18712840|gb|BM522687.1|BM522687EST: GGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGT TTATCCGTGAGTACACCGGCAAAGTTGATGAACTGGTGAAGGATAAAATTG
genomic: GGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGGtttgtattcc ... ctgatgtagtTTATCCGTGAGTACACCGGCAAAGTTGATGAACTGGTGAAGGATAAAATTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTCTATTTGTTTGCTATGATTTGATCCGGGCAGACATTGCTCTTGAATTGGCCTGGATGAACAATATGATTGACTTTGCCTTCCCATATCTCCTGCAGGtttgtattccttctgtgctgcttacttttattacttaaacatacatcgacatgtattatttctttttcaacattttatctagtgcttttttttaattaattgtcttcttctttcgctgatgtagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG