Sequence
atgc intronic sequence ATGC exonic sequenceGTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGTGGAGACTCTGCATTAAGgtatattctaatatttggcttctgtctatattcaatgtaatgttaatatttttaattaggagtaaggacattgggttagaatcatcagatgtagtaaagt...
Basic information
species | Glycine max |
transcript | GLYMA14G37520.1 |
intron # | 27 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G37520.1 (Glycine max), 5'ss of exon 27
lower sequence: AT1G07110.1 (Arabidopsis thaliana), 5'ss of exon 16
GTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGTGGAGACTCTGCATTAAGgtatattctaatatttggcttctgtctata---ttcaatgtaatgttaatatttttaattaggagtaaggacattgggttagaatcatcagatgtagtaaagt
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GTGAATACGCATCTCACCCCACGACCAATACTACTCACTCGGCATGGAGAAAGCATGGATAATGTTAGAGGCAGAATTGGAGGAGATAGCGTAATAAGgtatgttctctgctctgtctcttccaaatgccgttggtttcagccttttttttttcttctttttttttgaatacc---tttcagtttttcgttttgtttgcca
upper sequence: GLYMA14G37520.1 (Glycine max), 5'ss of exon 27
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 16
GTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGTGGAGACTCTGCATTAAGgtatattctaatatttggcttctgtctatattcaatgtaatgttaatatttttaattaggagtaaggacattgggttagaatcatcagatg-tagtaaagt--
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GTTAATACACATCTCACACCCCGACCAATTTTACTTACTAGGCATGGAGAGAGTCGGGATAATGTTAGAGGTAGAATTGGGGGTGACACTGCATTAAGgtatacaatataccttttctagattgttgatttattattttgttggtttaactatctttca--aaaatcatagaatt-gtctgattgaatgataatgattttc
upper sequence: GLYMA14G37520.1 (Glycine max), 5'ss of exon 27
lower sequence: PP1S414_24V6.1 (Physcomitrella patens), 5'ss of exon 16
GTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGTGGAGACTCTGCATTAAGgtatattctaatatttggcttctgtctatattcaatgtaatgttaatatttttaattaggagtaag-gacattgggtta-gaatcatcagatgtagtaaagt
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GTCAACACCCACATCACACCACGGCCGATATTACTCACTCGGCATGGTGAAAGCCAGGATAATGTGAAGGGCCGTATTGGTGGAGACCCCGTACTTAGgta-atgtttttacttagcgcgtctct-ttcctagaatagtattaattgcgcaccgatgtcgtgattgccctcaaattgtggatctgcttctcgatcacatcMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193519728|gb|FK476263.1|FK476263EST: GTGAGAGGCAGAATTGGTGGAGACTCTGCATTAAG TGAGGCTGGAGAACTTTATAAAAAGAAGCTTGCCAAATTTGTTGAAAAGCG
genomic: GTGAGAGGCAGAATTGGTGGAGACTCTGCATTAAGgtatattcta ... gtttcaacagTGAGGCTGGAGAACTTTATAAAAAGAAGCTTGCCAAATTTGTTGAAAAGCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTAATACACATCTTACACCACGCCCAATATTACTTACCCGGCATGGAGAAAGTCAGTATAATGTGAGAGGCAGAATTGGTGGAGACTCTGCATTAAGgtatattctaatatttggcttctgtctatattcaatgtaatgttaatatttttaattaggagtaaggacattgggttagaatcatcagatgtagtaaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA