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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTGGTCTCAATATCTCTTGGTGCTTTGGTGCATCTCATTGAAGTTGGTGGACACCAATTCAGTGAAAGTGACTGGGACACACTACTTAAAAGCATAAGgtgtaaattttttcctattttctgaagattcatttttgttattctaatatcaactgtaaaacattcatttaatcttgatctccag

Basic information

species Glycine max
transcript GLYMA13G17610.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 27
lower sequence: LOC_Os07g37750.1 (Oryza sativa), 5'ss of exon 24
CAGTGGTCTCAATATCTCTTGGTGCTTTGGTGCATCTCATTGAAGTTGGTGGACACCAATTCAGTGAAAGTGACTGGGACACACTACTTAAAAGCATAAGgtgtaaattttt-tcctattttctgaagattcatttttgttattctaatatcaactgtaaaacattcatttaatcttgatctccag
| || || |||||  ||||||| ||||| || |||||||| || |||||||| |||||||||||||| || |||||||| ||||| || || ||||| |||| |    |    | ||||||||  |   || |  ||  || | ||  | |       | |  | |   ||||| |   |   |||
CTGTTGTTTCAATTGCTCTTGGAGCTTTAGTTCATCTCATAGAGGTTGGTGGTCACCAATTCAGTGACAGCGACTGGGAAACACTTCTAAAGAGCATTAGgtatctcctcaagttctattttccca---ttaaaattaattgtgcttttgttgttcacatattaatg--ttaatatcacttgtcag

upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 27
lower sequence: GRMZM2G335287_T01 (Zea mays), 5'ss of exon 25
CAGTGGTCTCAATATCTCTTGGTGCTTTGGTGCATCTCATTGAAGTTGGTGGACACCAATTCAGTGAAAGTGACTGGGACACACTACTTAAAAGCATAAGgtgtaaattttttcctattttctgaagattcatttttgttattctaatatcaactgtaaaacattcatt--taatcttgatctccag
| || || |||||  ||||||| ||||| || ||||| |||||||||||||| ||||| ||||||||  |||| ||||| ||| || | || || || ||||    ||||| |   ||||| |    |   |||||| |||   |   || |  | |  |    ||| |  | || |   |   |||
CTGTCGTTTCAATTGCTCTTGGCGCTTTAGTTCATCTGATTGAAGTTGGTGGTCACCAGTTCAGTGATGGTGATTGGGATACATTATTAAAGAGTATTAGgt----attttctgaaattttgttcgtaccaattttttttacctttccattatttatttatttgtcactgttgatatcacttgtcag

upper sequence: GLYMA13G17610.1 (Glycine max), 5'ss of exon 27
lower sequence: Vv11s0016g00170.t01 (Vitis vinifera), 5'ss of exon 27
CAGTGGTCTCAATATCTCTTGGTGCTTTGGTGCATCTCATTGAAGTTGGTGGACACCAATTCAGTGAAAGTGACTGGGACACACTACTTAAAAGCATAAGgtgtaaattttttcctattttctgaagattcatttttgttattctaatatcaactgtaaaacattcatttaatcttgatctccag
||||||| ||||| ||||| ||||| || ||||||||||| |||||||| ||||||||||||||||| ||||| ||||| ||| |  | ||||||||||||||   || | ||  |||||   |     | ||||   | |     ||||   || |||   || | | |  || ||| |  |||
CAGTGGTTTCAATCTCTCTGGGTGCATTAGTGCATCTCATAGAAGTTGGAGGACACCAATTCAGTGAGAGTGATTGGGATACATTGTTGAAAAGCATAAGgtgcttatctcttgttatttctag-----ttatttccatca-----atatt--ctctaattaatacttcttgtcatgaccaacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18040303|gb|BM308597.1|BM308597
EST:     GGACACCAATTCAGTGAAAGTGACTGGGACACACTACTTAAAAGCATAAG                         AGATGCTTCGTATACTACACAACCTCTAGAACTGCTTAATGTGTTAAGTTT
genomic: GGACACCAATTCAGTGAAAGTGACTGGGACACACTACTTAAAAGCATAAGgtgtaaattt ... tgatctccagAGATGCTTCGTATACTACACAACCTCTAGAACTGCTTAATGTGTTAAGTTT