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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGTGCAAGAAGGACAAGCTTAGGTATCGTTATCCTCGTGGTGAGTCATACTTGGATGTCATTCAAAGgtatattttatcttataaatattatttagttccttgcttcaacttgcttgatataaataactcaagttttagtaataatacag

Basic information

species Glycine max
transcript GLYMA11G27410.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 27
lower sequence: LOC_Os03g18310.2 (Oryza sativa), 5'ss of exon 19
ATCGTGCAAGAAGGACAAGCTTAGGTATCGTTATCCTCGTGGTGAGTCATACTTGGATGTCATTCAAAGgtatattttatct---tataaatatt--atttagttccttgcttc--aacttgcttgatataaataac-tcaagttttagtaataatacag
|||  | |  ||||||||||| ||||||||||||||| | || || || ||| | ||||||||||||||||  |||    ||   |  || |||   ||  ||     |  | |  || |  | |  | ||| ||   ||         ||    |||||
ATCACGTAGCAAGGACAAGCTGAGGTATCGTTATCCTAGAGGAGAATCCTACCTCGATGTCATTCAAAGgttaattcaggctatgtgaaattatcacatgcagacatatattacgtaattcacctattgtaactattatcggtgcactttatctttacag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 27
lower sequence: LOC_Os03g18310.1 (Oryza sativa), 5'ss of exon 19
ATCGTGCAAGAAGGACAAGCTTAGGTATCGTTATCCTCGTGGTGAGTCATACTTGGATGTCATTCAAAGgtatattttatct---tataaatatt--atttagttccttgcttc--aacttgcttgatataaataactcaagttttagtaataat-acag--------------
|||  | |  ||||||||||| ||||||||||||||| | || || || ||| | ||||||||||||||||  |||    ||   |  || |||   ||  ||     |  | |  || |  | |  | ||| ||      ||     | ||  | ||||              
ATCACGTAGCAAGGACAAGCTGAGGTATCGTTATCCTAGAGGAGAATCCTACCTCGATGTCATTCAAAGgttaattcaggctatgtgaaattatcacatgcagacatatattacgtaattcacctattgtaactattatcggtgcactttatctttacagtcttctctgttcag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 27
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 20
ATCGTGCAAGAAGGACAAGCTTAGGTATCGTTATCCTCGTGGTGAGTCATACTTGGATGTCATTCAAAGgtat---attttatcttataaatattatttagttc---cttgcttcaacttgct---tgatataaataactcaagttttagtaataatacag
 ||  | |||||||||||||| |||||||| |||||||||||||| || ||| ||||||| || ||||||| |   || |  | ||| ||| | |  || ||     |||   |    || |    |||| ||    | | || |||  | | |||| |||
GTCACGTAAGAAGGACAAGCTGAGGTATCGGTATCCTCGTGGTGAATCTTACCTGGATGTTATCCAAAGgtttgcaatctgctgttacaaagaatgatttgtcaaaacttaaatattttttccaactgatttattagaataaactttctgcattaatgcag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 27
lower sequence: PP1S414_24V6.1 (Physcomitrella patens), 5'ss of exon 20
ATCGTGCAAGAAGGACAAGCTTAGGTATCGTTATCCTCGTGGTGAGTCATACTTGGATGTCATTCAAAGgtatattttatcttataaatattatttagttccttg-cttcaac-------ttgct-tgatataaataactcaagttttagtaataatacag----------------------
| |  | |||   || || ||  | ||||| |||||||||||||| || |||||||| ||||| ||||||||||  | |  |    ||    ||||||||| |   | | |||       |  || |||  |   | |  |||   || | | |  |  |                       
AGCACGTAAGGCAGATAAACTCCGCTATCGCTATCCTCGTGGTGAATCTTACTTGGACGTCATCCAAAGgtatacctcacatctgcaactgaatttagttcttaaacgttaacgatgatttcactctgagctggttcatgcaaagctttgaagtgtttgatgattattattcgattcttgtag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 27
lower sequence: PP1S235_92V6.1 (Physcomitrella patens), 5'ss of exon 19
ATCGTGCAAGAAGGACAAGCTTAGGTATCGTTATCCTCGTGGTGAGTCATACTTGGATGTCATTCAAAGgtatattt------------tatctt---ataaatattatt--tagttccttgcttcaacttgcttgatataaataactcaagttttagtaataat-acag-----------
| |  |||||   || || ||  |||| ||||||||||| ||||| || || ||||| ||||||||||||||  | |            ||  ||   |||   |  |||  |  | | ||      |  || ||  |  |     |  |   | |  | || |  |  |           
AGCACGCAAGGCAGATAAACTCCGGTACCGTTATCCTCGCGGTGAATCTTATTTGGACGTCATTCAAAGgtaagtctatgaactgcaattaaatttagataggaaacattagtgatgctttctcctgagctggttattgcacgccccgtagtatctgatgattaccatgggcttcctgcag