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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATGCAAATCTTGCTTGAGAGAAATTGTGATCCTTGCATCAGCTAATGTTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtatttatttaactttatctctctttcttgtattatttcatttaactggaacgcgattgttacagttgagttaattttgcttattggtatag

Basic information

species Glycine max
transcript GLYMA11G02580.1
intron # 27
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9902960|gb|BE611928.1|BE611928
EST:     TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAG                         GCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
genomic: TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtattt ... attggtatagGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
EST: gi|193615955|gb|FK566537.1|FK566537
EST:     TTGATGAAGATATTAGCATTGTCTCCGGAAAATTGGCCACTGCTGTAAAG                         GCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
genomic: TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtattt ... attggtatagGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
EST: gi|151408906|gb|EV278714.1|EV278714
EST:     TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAG                         GCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
genomic: TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtattt ... attggtatagGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
EST: gi|16105685|gb|BI893425.1|BI893425
EST:     TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAG                         GCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGT
genomic: TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtattt ... attggtatagGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGT
EST: gi|192331355|gb|FK019644.1|FK019644
EST:     TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAG                         GCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
genomic: TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtattt ... attggtatagGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
EST: gi|7795142|gb|AW780539.1|AW780539
EST:     TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAG                         GCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
genomic: TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtattt ... attggtatagGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG
EST: gi|12773674|gb|BG238601.1|BG238601
EST:     TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAG                         GCTAGCAAAGTGGCTATTG-CTATGATCAGCATGATACTTGTGACCTTGAG
genomic: TTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtattt ... attggtatagGCTAGCAAAGTGGCTATTGTCTATGATCAGCATGATACTTGTGACCTTGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTCATGCAAATCTTGCTTGAGAGAAATTGTGATCCTTGCATCAGCTAATGTTGATGAAGATATTAGCATTGTCTCCGAAAAATTGGCCACTGCTGTAAAGgcatgtatttatttaactttatctctctttcttgtattatttcatttaactggaacgcgattgttacagttgagttaattttgcttattggtatag

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