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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGCGGCTTTTGAATGTGTAGACACATTGCTGGATAGTTGCCTTGATCAAGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGgtgagcattagttataatcttttctccatcactgctaattacatttgttggttctgattcacttatccaaaaggggggccagtgcacaatacttccacct...

Basic information

species Glycine max
transcript GLYMA07G40230.1
intron # 27
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 27
lower sequence: LOC_Os02g07120.1 (Oryza sativa), 5'ss of exon 26
AAGGCGGCTTTTGAATGTGTAGACACATTGCTGGATAGTTGCCTTGATCAAGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGgtgagcattagttataatcttttctccatcactgctaatta-cattt-gttggttctgattcacttatccaaaaggggggccagtgcacaatacttccacct
|| || || ||||||||||| || |||||||||||||| || ||||||||||||||||| |||||||| || |||||||  ||   ||||||||| | |||| || | | |||| | |   |  |  ||||||   |   | ||||  |||   ||   |  | | ||  | | |    |   |||   |||  ||  | | 
AAAGCTGCCTTTGAATGTGTGGATACATTGCTGGATAGCTGTCTTGATCAAGTGAACCCATCATCATTTATCGTTCCTTTCCTCTTATCTGGTTTAGGTGgtaagtact-gttacactaaataatttatcactttgaccgaacattccgtttaatccactgtagtaatatagatgtataggtggtgtgtaatctttaaaac-

upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 27
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 27
AAGGCGGCTTTTGAATGTGTAGACACATTGCTGGATAGTTGCCTTGATCAAGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGgtgagcattagttataatcttttctccatcactgctaattacatttg-ttggttctgattcacttatccaaaaggggggccagtgcacaatacttccacct------------------------------------------------------------------------------------
|| || ||||||||||||||||||||| |||| || ||||| |||||||||||||| || ||||| ||||||||||| ||||| ||||| ||||||||||||| |  ||  || |  | ||||   ||  ||    | |    |||  ||   | |  ||   | | ||          ||| |  |   || || ||  |                                                                                    
AAAGCAGCTTTTGAATGTGTAGACACACTGCTAGACAGTTGTCTTGATCAAGTGAATCCTTCATCTTTCATTGTTCCCTATCTCAAATCCGGTTTGGATGgtgcgtttttatttttttatttttaacaagaccatcattcttttttacttcactttatttttttcacccttttcccc--ccactttagtttagtttcatttcagctgctaaaagttatttcatgtttctatacttgaagtttagtttatcacttcctgaactgaaattgatttggctcttctcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15199998|gb|BI424117.1|BI424117
EST:     AGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATG                         ATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTG
genomic: AGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGgtgagcatta ... gttttttcagATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTG
EST: gi|7285013|gb|AW597500.1|AW597500
EST:     AAATCTGGTTTGGATG                         ATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTG
genomic: AAATCTGGTTTGGATGgtgagcatta ... gttttttcagATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTG
EST: gi|151410822|gb|EV280637.1|EV280637
EST:     AGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATG                         ATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTG
genomic: AGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGgtgagcatta ... gttttttcagATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTG
EST: gi|20812570|gb|BQ297048.1|BQ297048
EST:     AGTGAACCCTTTTTCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATG                         ATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTG
genomic: AGTGAACCCGTCATCATTCATTGTTCCTTATCTTAAATCTGGTTTGGATGgtgagcatta ... gttttttcagATCATTATGATGTTAAAATGCCATGCCACCTGATACTCTCCAAACTAGCTG