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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattgatattcctactttttcatcttaactgcaacttttggattttatggtcttgtatccttattgatctccttcccctatccctatatgaag

Basic information

species Glycine max
transcript GLYMA03G37930.1
intron # 27
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6915346|gb|AW396876.1|AW396876
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|18732914|gb|BM527320.1|BM527320
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|58023167|gb|CX709908.1|CX709908
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|21285375|gb|BQ473246.1|BQ473246
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|18719223|gb|BM523146.1|BM523146
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|31463124|gb|CD405152.1|CD405152
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|10845877|gb|BF068909.1|BF068909
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|17401696|gb|BM178478.1|BM178478
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|120491295|gb|EH219462.1|EH219462
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|21675654|gb|BQ628005.1|BQ628005
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|9983235|gb|BE657343.1|BE657343
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|51345184|gb|CO985917.1|CO985917
EST:     CCTCTTATAGTTGCATTTATAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCACCCCAGGACTCAC
EST: gi|37995553|gb|CF807142.1|CF807142
EST:     CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAG                         ATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCAC
genomic: CCTCTTATAGTTGCATTTCTAGTTGTTGCACTTTTTCTTAGCATGCCAAGgtaagattga ... ctatatgaagATTGAAGGATTTGTATCAAGCCACGGTAGACATACCCAC