Sequence
atgc intronic sequence ATGC exonic sequenceGATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATGgtatgctcctattcactctgtaattttttttacatgtagacttgtaaagtaatttgtattttacatttgttttcag
Basic information
species | Glycine max |
transcript | GLYMA20G24040.1 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 26
lower sequence: LOC_Os04g59494.1 (Oryza sativa), 5'ss of exon 26
GATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATGgtat------gctcctattcact-ctgtaattttttttacatgtagacttgtaaagtaatttgt-attttacatttgttttcag
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GATACGAGATGATTTTGAGAAAGAGGATGCATTCCATGGTCTATGTGCAATGgtacatccacgcttttgcttactgttacaatttacaaagctgtctgacttacacaaaatactgtcattctatactag-------
upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 26
lower sequence: PP1S276_77V6.1 (Physcomitrella patens), 5'ss of exon 26
GATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATGgtatgctcct--attcactctgtaattttttttacatgtagact-tgtaaagtaatttgt---attttacatttgttttcag-------------------------------------------------------------
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GATACGAGATGATTTTGAGAAAGAAGATGCTTTTCGAGGCCTGTGTGCTATGgtatatttcgcagatcacaac-caaccaggaacatatccgcattatcgaaagccattttttagattgacaagatgctttcatagaattgaaggaaatttattaaaaagtgtcgactaattgatcgtgtggggtggtatattag
upper sequence: GLYMA20G24040.1 (Glycine max), 5'ss of exon 26
lower sequence: PP1S14_82V6.1 (Physcomitrella patens), 5'ss of exon 26
GATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATGgtatgctcct-----attcactctgtaattttttttacatgtagacttgtaaa-gtaatttgtattttacatttgttttcag------------------
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GATACGAGATGATTTTGAGAAGGAAGATGCTTTTCGAGGATTGTGTGCTATGgtatttaccatgctgattcattttagacagtatcgtgggtgcagccttaaaagtgtggtttttaagtcctgtgtgaaaggaatgagtcagtatggtgtttMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|254314126|gb|GR831755.1|GR831755EST: TACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATG GTTAAGGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAA
genomic: TACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATGgtatgctcct ... ttgttttcagGTTAAGGCTAATCCTTCTGGAGCTCTAAGCTCGCTTGTTTACATGTGCAAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GATACGAGATGATGTTGAGAAAGAGGATGCTTTTAGAGGTCTATGTGCTATGgtatgctcctattcactctgtaattttttttacatgtagacttgtaaagtaatttgtattttacatttgttttcag
- - GAGATG
- - - - - - - - - - AAGAGG
- - - - - - - - - - AGAGGA
- - - - - - - - - - - GAGGAT
- - - - - - - - - - - AGGATG