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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtatgaatctatgattacttatgcctttttttctctcacttggaattgtttgcttctttttttttttggttaaccttgtttttaactgtcttgaaaaaaatattgatggcag

Basic information

species Glycine max
transcript GLYMA18G02110.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02110.1 (Glycine max), 5'ss of exon 26
lower sequence: LOC_Os01g73530.1 (Oryza sativa), 5'ss of exon 24
GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtatgaatctatgattacttatgcctttttttctctcacttggaattgtttgcttctttttttttttggttaaccttgtttttaactgtcttgaaaaaaatattgatggcag
|| || |||||||||||    || |||||||||||||| |||||||| |||||||||||| |  | || | ||  | |||   |  ||||  |   ||   | |   |||     | ||       | || | |  |  |  | |                        
GCTCGTTTGTTCTTCCACTGTCCAAAATTTGGTATCCTAGACGAGTGCACCAAgtatgta-gcgtata-gttttttaatgttctcatttccattttttaccaataaatgcacagctctt------ataaagcatactcattgcag------------------------

upper sequence: GLYMA18G02110.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G060045_T01 (Zea mays), 5'ss of exon 23
GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtatgaatctatgattacttatgcctttttttctctcacttggaattgtttgcttctttttttttttggttaaccttgtttttaactgtcttgaaaaaaatattgatggcag
|| || ||||| |||||| | ||||| |||||||||||||||||||| |||||||| || |   ||| | |  |  | | ||||||  | |          ||||  |     | | | || |   |||   | | || ||| | |||||    |     |||| ||||
GCTCGTTTGTTTTTCCATCATCCTAAGTTTGGTATCCTGGACGAGTGCACCAAgtacgtgt---tctgtcacaa--tgttccttttgattt----------attgcatttccttctctcttatcaattactgtgggttctaaat-tcttgcttga-----tgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8283600|gb|BE021159.1|BE021159
EST:     CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA                         TGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAAT
genomic: CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtatga ... ttgatggcagTGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAAT
EST: gi|120494271|gb|EH222438.1|EH222438
EST:     CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA                         TGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAAT
genomic: CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtatga ... ttgatggcagTGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAAT
EST: gi|8283612|gb|BE021171.1|BE021171
EST:     CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA                         TGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAAT
genomic: CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtatga ... ttgatggcagTGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAAT
EST: gi|208110980|gb|GD908740.1|GD908740
EST:     CTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA                         TGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAAT
genomic: CTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtatga ... ttgatggcagTGCCACTAGCGTTGATGTTGAAGAACACCTATATGGGCTAGCGAACAAAAT