Sequence
atgc intronic sequence ATGC exonic sequenceGAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATAAATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGgttgactttctttttctctttctaggttatgctcacgtattaagtcaggatgagtcatgacattaaaatctgttgctttctctatag
Basic information
species | Glycine max |
transcript | GLYMA15G18180.1 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM5G893864_T01 (Zea mays), 5'ss of exon 6
GAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATAAATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGgtt------gactttctt--tttctctttctaggttat-gctcacgtattaagtcaggatgagtcatg-acattaaaatctgttgctttctctatag---
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AAAGTTTATTCAGTTCCAGCTTACCGTAAATGTTGCAGCTCTTGTCATCAATGTTGTTGCTGCTGTTTCCTCAGGAAATGTTCCTCTAAATGCTGTTCAGgtttggataaacatatgtagtatgattttttaaataatcactgctatattaaataacatctattcgtctgtattggtattttaagtttttaacccaagag
upper sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 26
lower sequence: AT5G57110.2 (Arabidopsis thaliana), 5'ss of exon 28
GAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATAAATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGgtt-gactttctttttc-------tctttctaggttatgctcacgtattaagtcaggatgagtcatgacattaaaatctgttgctttctctatag-----
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GAAGTTCATCCAATTTCAGCTCACAGTCAATGTCGCCGCTCTCGTAATTAATGTTGTAGCTGCTATTTCGAGTGGTGACGTTCCACTTACCGCTGTGCAGgtttgagtttctgttgcatttagctctttttgaatatctctctctctctaaat-attataagtttgctcat--atatttggcgttttctttaacatacag
upper sequence: GLYMA15G18180.1 (Glycine max), 5'ss of exon 26
lower sequence: Vv11s0052g00320.t01 (Vitis vinifera), 5'ss of exon 29
GAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATAAATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGgttga----ctttctttttctctttctaggttatgctcacgtattaagtcaggatgagtcatgacattaaaatctgttgctttctctatag
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GAAATTCATCCAGTTTCAGCTCACAGTTAATGTTGCAGCTCTAATAATTAATGTCGTGGCAGCAATTTCCTCTGGCAATGTTCCACTAAATGCAGTGCAGgttggtggcccacccattgctgcctcttgagttgacagttctattatgtcgtctcatttgtttaactctgtgttgtctactttgcttacagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|23729217|gb|BU762697.1|BU762697EST: ATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAA CTTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGACCTGGTA
genomic: ATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGgttgactttc ... ttctctatagCTTCTTTGGGTAAATCTTATCATGGATACTCTGGGAGCACTAGCCCTGGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAAATTTATCCAGTTTCAGCTTACAGTAAATGTGGCCGCTCTAGTGATAAATGTTGTTGCTGCTATTTCATCTGGTGATGTTCCATTAAATGCAGTGCAGgttgactttctttttctctttctaggttatgctcacgtattaagtcaggatgagtcatgacattaaaatctgttgctttctctatag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT