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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttcactatatttattactggatgatttttcttccttttaatgataatcattttttaatatttcccccctag

Basic information

species Glycine max
transcript GLYMA14G37510.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 28
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttcactatatttattactggatgatttttcttccttttaatgataatcattttttaatatttcccccctag
||| |||||| | ||||||||  | || ||  | ||||||||||||||||| || ||||||||||| ||| | || ||||| ||||| || || |||||||||| || |   |     | |  ||     |||| |||   | |   |||| | |      ||  | ||   ||  || || |           
TTGTCTCTTTATTTGTTATGACTTGATCCGTGCGGATGTTGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCATTCCCCTATCTGTTACAGgtatcttgtttccgttcatgtgtttgggactattcatttacgtacagttttccat------aacaacaaagcttgcttcatgtgcag-------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 28
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttcactatatttattactggatgatttttcttccttttaatgataatcattttttaatatttcccccctag
||| |||||| | ||||||||  | || ||  | ||||||||||||||||| || ||||||||||| ||| | || ||||| ||||| || || |||||||||| || |   |     | |  ||     |||| |||   | |   |||| | |      ||  | ||   ||  ||  | |           
TTGTCTCTTTATTTGTTATGACTTGATCCGTGCGGATGTTGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCATTCCCCTATCTGTTACAGgtatcttgtttccgttcatgtgtttgggactattcatttacgaacagttttccat------aacaacaaagcttgcttcgtgtgcag-------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G062042_T02 (Zea mays), 5'ss of exon 13
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttcactatatttattact-ggatgatttttcttccttttaatgataatcattttttaatatttcccccctag
|||||||||  | || || ||  | || ||||| ||||| ||||||||||| || ||||||||||| ||| | || ||||| ||||| ||||| |||||||||  |  |    |  |     |||| |         ||||   ||    || |     |   ||    |   |  | |   | |  |  |  ||
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgcgccgacgtctacttacatacagttaccatagtaacatccctactgtgctatgtgactgtctgcgcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G115138_T01 (Zea mays), 5'ss of exon 12
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttca---ctatatttattactggatgatttttcttccttttaatgataatcattttttaatatttcccccctag
|||||||||  | || || ||  | || ||||| ||||| ||||||||||| || ||||||||||| ||| | || ||||| ||||| ||||| |||||||||  |  |    |  |     ||||    | |  | ||||  |  ||    || |     |   ||    |   |  | |   | |     |  ||
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatt--tacatacagttaccatagtaacatccctactgtgctatgtgactgtgtgcgcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 5
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatatt-ttccactggggtttcgttcactatatttattactggatgatttttcttccttttaatgataatcattttttaatatttcccccctag
|||||||||  | || || ||  | || ||||| ||||| ||||||||||| || ||||||||||| ||| | || ||||| ||||||||||| || ||||||  ||  | |  |     |  |      || ||| ||  || || ||||    |  |   |   ||  |   | |  |               
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCGTGGATGAACAACATGTTGGACTTTGCCTTCCCATACCTGTTGCAGgtaacttacttctgtccatatctgacggtgatgtttgtttatgtataatttactatggtaacatccatgctgcgtgtgcag--------------

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 13
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttcactatatttattactggatgatttttcttccttttaatgataatcat-tttttaatatttcccccctag
|||||||||  | || || ||  | || ||||| ||||| ||||||||||| || ||||||||||| ||| | || ||||| ||||| ||||| |||||||||  |  |         ||| || ||   | ||     |    |   ||| | | |  || |  ||| | |  |   || ||| | | |     
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagt------aatttttgtcca---tgttcgcgccgacgtctatttacatacagtttaccatagtaacatccctactatgtgcgcag---

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G057576_T02 (Zea mays), 5'ss of exon 26
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttca---ctatatttattactggatgatttttcttccttttaatgataatcattttttaatatttcccccctag
|||||||||  | || || ||  | || ||||||||||| ||||||||||| || ||||||||||| ||| | || ||||| ||||| ||||| || ||||||  |  |    |  |     ||||    | |  | ||||     |   |||  | |  |   |    || |  |  | |   | |     |  ||
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCAGATGTGGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTGCAGgtacgtagtaatttctgtccatgttcgtgccgacgtctatttacatacagtttaccatagtaacatctctact-gtgctatgtgactgtgtgcgcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G091121_T01 (Zea mays), 5'ss of exon 8
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttca---ctatatttattactggatgatttttcttccttttaatgataatcattttttaatatttcccccctag
|||||||||  | || || ||  | || ||||| ||||| ||||||||||| || ||||||||||| ||| | || ||||| ||||| ||||| |||||||||  |  |    |  |     ||||    | |  | ||||     ||  ||    |        ||    |   |  | |   | |     |  ||
TTGCCTCTTCATTTGCTACGACCTGATCCGGCCGGATGTCGCTCTTGAGCTTGCATGGATGAACAACATGGTGGACTTTGCCTTCCCGTACCTGTTACAGgtacgtagtaatttctgtccatgttcgtgtcgacgtctatttacatatagttaccatagtaac--atccctactgtgctatgtgactgtgtgcgcag

upper sequence: GLYMA14G37510.1 (Glycine max), 5'ss of exon 26
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 28
TTGCCTCTTTGTCTGTTATGATATAATACGGCCAGATGTTGCTCTTGAGCTAGCTTGGATGAACAATATGATTGATTTTGCTTTCCCATACCTCTTACAGgtatattttccactggggtttcgttcactatatttattactggatgatttttcttccttttaatga-taatcattttttaatatttcccccctag
 ||||||||||||||||| ||| |||| |||||||| ||||  |||||||| || ||||||||||||||||| || ||||| |||||||| |||||||||||| | | |    |      | |||  |||| |   || |     |  ||   || || | ||  | |  |||||||||   ||           
ATGCCTCTTTGTCTGTTACGATTTAATTCGGCCAGACGTTGTCCTTGAGCTTGCATGGATGAACAATATGATCGACTTTGCCTTCCCATATCTCTTACAGgtaaactatttgtttcacccttgtt--ctatttggctttcaaatcgtcttcattttctctcaaccactgttcattttttttcatag---------