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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTTGAATGAGATATATGTCGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAGgtgtggaaatttgctcttaattggaactattttttggtttcagctgtggaaatctcagattattgttattactgtatacgcag

Basic information

species Glycine max
transcript GLYMA14G06340.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 26
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 26
AGCGTTGAATGAGATATATGTCGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAGgtgtgg---aaatttgctcttaattggaactattttttggtttcagctgtggaaa----------tctcagattat-tgttattactgtatacgcag-------
 ||  ||||||||||||| || || || ||||| || ||||| ||||| ||||| |||||||| || || | |||||| || || ||||| ||||| |||||   |   |||| | ||     ||  |  |||||| |   || |    ||||||          |   |||| || |  | || ||||  | |  |       
GGCTCTGAATGAGATATACGTGGAAGAAGAAGACTACGATAGGTTGCGAGAGTCTATTGATTTACATGACAGCTTTGACCAGATTGGCCTCGCTCAGAAGgtaaagttcaaatatactacccctttaa--tattttctctctttaaaaatggaaaaagaatggccttagagatgatataatcttcctgtgaatggtgcgaacag

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 26
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 26
AGCGTTGAATGAGATATATGTCGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAGgtgtggaaatttg-ctcttaattggaactattttttggtttcagctgtggaaatctcagattattgttattactgtatacgcag---
|||  |||||||||||||||  || || ||||| ||||| || ||||||||||| ||||||||||| || |  ||||| || ||||| || ||||| |||||  |    |    || |  || |     |  |||   ||||  ||    ||||   |  |||| |||||       | || |    
AGCTCTGAATGAGATATATGCAGAAGAAGAAGACTATGACAGGTTGCGCGAGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAGgtaagagtttaaatctatctatcgagtacacatttatatttcccct---taaatactaatttatcgttatgggatggtgcgaaatag

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 26
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
AGCGTTGAATGAGATATATGTCGAGGAGGAAGATTATGATAGATTGCGCGAGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAGgtgtggaaatttgctcttaattggaactattttt-----tggtttca-gctgtgga-aatctca-gattattgttattac-tgtatacgcag
 || ||||||| ||| ||||| ||||||||||| ||||| ||| |||| || ||||||||| |||| |||||||||||||| || |||||||| || ||||||  | |   |    |||  || || | |||||     |||||  | ||  |||   || |||  |   |||||  ||  ||| |  ||||
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatttctttaggtgcaattgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406151|gb|EV275966.1|EV275966
EST:     ATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAG                         ATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
genomic: ATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAGgtgtggaaat ... gtatacgcagATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
EST: gi|6481487|gb|AW200758.1|AW200758
EST:     AGTCAATTGATTTGCACGATAACTNTGATCAAATAGGCCTTGCTCANAAG                         ATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC
genomic: AGTCAATTGATTTGCACGATAACTTTGATCAAATAGGCCTTGCTCAAAAGgtgtggaaat ... gtatacgcagATTGAAAAGCATGAGCTTCTTGAGATGAGACGTGTTGCTGCTTATATTTAC