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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag

Basic information

species Glycine max
transcript GLYMA11G06720.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 26
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag
 |||||||||||  |||||| ||| || || |||||||| ||||||||||||||  | ||| ||||||| ||||| ||||||||||||||||| || ||||| || |     |||  ||   ||  || |     |||       |     |    || ||||    |||    |||   || | |    |||||  |                      
AGCTTTGAATGAGCTTTATGTTGAAGAGGAGGACTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAAAAGgtaaagcgattatatgattgtactgcttattgatgttatt-----tttccttttttattttattttgaataactaatggctggaatgcc-ttgatcag----------------------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 26
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag
  ||||||||||  |||||| ||| || || || ||||| ||||||||||||||  | ||| ||||||| ||||| ||||||||||||||||| |||||||| || |  | |      ||||  |  ||     |||      | |     |     | ||||    |||    |||   || | |    |||||  |                      
ATCTTTGAATGAGCTTTATGTTGAAGAGGAGGATTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAGAAGgtaaagcg-attagatgattgtactgctt-----attgatgttatttttccttttttttttattttgaataactaatggctggaatgcc-ttgatcag----------------------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 3
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag
 || ||||| ||| |||||| ||| || |||||||| || ||||||||||||||| | ||| ||||||| ||||| || || ||||||||||| ||||||||  |   ||   |  |    ||||    || | ||| ||       |   |   |||    || ||    ||   |   ||  || | ||| | |  | |          |  ||||||
AGCCTTGAACGAACTTTATGTTGAAGAGGAAGACTACGAGAGACTCCGTGAATCAGTTGATATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaatagccagata--atcttgcagtgcctatt-gctgctgctgttgttgtaat--cgtgcgatgcatattgttactgctttttaatttaataacctgtgtccatttctggagcag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 3
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag
 || ||||||||  |||||| ||| || ||||||||||| ||||||||||||||| | ||  ||||||| ||||| || || ||||||||||| ||||||||  |    |   |      |        || | |||        | |   | |   ||| |||   | | | |    ||| |||| | |||   ||  ||||    |     |||||||
AGCCTTGAATGAGCTTTATGTTGAAGAGGAAGACTATGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaacagcca------gatgcgcagtgcctattgttg----ttgttgtaatggtgtgatgcttattgttactgttttcaatt-taattacctgtgttcatttct-----tgagcag

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G062042_T02 (Zea mays), 5'ss of exon 11
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag
 || ||||||||| ||||||  || || || ||||| || ||||||||||||||| | ||  ||||||| ||||| || ||||| |||||||| |||||||| ||    |  ||   |       |    |||| |  |   || ||        |  | | |        ||| || | | ||||  ||||||   |                      
AGCCTTGAATGAACTTTATGTCGAAGATGAGGACTACGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtc-gtgcaattcctatcgctaccgcttttaatttaataacatgtgttaatt--tattgagcag----------------------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 25
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag
 || ||||||||  ||||||  || || || ||||| || ||||||||||||||| | ||  ||||||| ||||| || ||||| |||||||| |||||||| ||    |  ||   |       |    |||| |  |   || ||  |     |  | | |        ||  || | | ||||  ||||||   |                      
AGCCTTGAATGAGCTTTATGTCGAAGAGGAGGACTACGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtc-gtgcaattcctgtcgctaccgcttttaatttaatagcatgtgttaatt--tattgagcag----------------------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgttatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag
                            || |||||||| ||||||||||||||| | ||   |||||| ||||| || ||||| |||||||| |||||||| ||    |  ||   |       |    |||| |  |   || ||        |  | | |        ||| || | | ||||  ||||||   |                      
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtc-gtgcaattcctatcgctaccgcttttaatttaataacatgtgttaatt--tattgagcag----------------------

upper sequence: GLYMA11G06720.1 (Glycine max), 5'ss of exon 26
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 26
GGCTTTGAATGAAATTTATGCTGAGGAAGAAGACTATGACAGACTCCGTGAATCAATAGATCTGCATGATAACTTCGATCAGATAGGTCTTGCACAGAAGgtgaatcttacttatcttttgtcttattttgacaattagcaaaaatcgagatcagaatgt-tatgggaaatttaaaatatttgaattattattgattggcttcaacaatacacatgagcag
 || || ||||  ||| |||  ||||| || |||||||| ||||| || |||||||||||| ||||||||||||| || |||||||| ||||||||||||||||     | | |   ||| | || ||   |   || | |    ||   | |||||  | ||    | || ||    ||  |  |    |                              
AGCATTAAATGGTATTCATGTAGAGGAGGAGGACTATGATAGACTTCGGGAATCAATAGATATGCATGATAACTTTGACCAGATAGGCCTTGCACAGAAGgtgagagagattga--atttattttgtt---aatgttggtaggcttcataagcagaacatgtacataagatctagtg-atgcgtgtggacag-----------------------------