1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' |
AATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggctttttggaatgacatcttagcagtatgctagtttttttattattattaagtttttcatttttctctattgtaaacatagttagaatggtttgaggttgcataaatccattcatacttaatgtataatttgttgatgcatgacag
species | Glycine max |
transcript | GLYMA06G17940.1 |
intron # | 26 |
splice site | 5' |
intron type | U2 |
EST: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAG GAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAEST: gi|151404219|gb|EV274029.1|EV274029
genomic: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggcttt ... tgcatgacagGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
EST: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAG GAACAGGCTGCTGCTGTATCAGAAAGTAGACCTGCTCCAGCATTAAGTGGAEST: gi|27427279|gb|CA938799.1|CA938799
genomic: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggcttt ... tgcatgacagGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
EST: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAG GAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAEST: gi|193339302|gb|FK305265.1|FK305265
genomic: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggcttt ... tgcatgacagGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
EST: AAAAGGAGAAAAAG GAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGAEST: gi|10237116|gb|BE806004.1|BE806004
genomic: AAAAGGAGAAAAAGgtatggcttt ... tgcatgacagGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
EST: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAG GAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
genomic: TAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggcttt ... tgcatgacagGAACAGGCTGCTGCTGTATCAGAAGGTAGACCTGCTCCAGCATTAAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AATTTGTGTGTAACTGCTGCACACCGTCCAATTAAAGAGATATTAGAAAAGGAGAAAAAGgtatggctttttggaatgacatcttagcagtatgctagtttttttattattattaagtttttcatttttctctattgtaaacatagttagaatggtttgaggttgcataaatccattcatacttaatgtataatttgttgatgcatgacag
- - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA