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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTAAATTTGAATCTGATATCATTGAGGTTGACTTGGAGAAAAATGTTCAGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttcttttgtctctaccctttctagttttgtctgccttttttttttcaaagttcgccatgaactattttctgttttcttctgttgctgcggctcatgtattttttattcttatctcttgtacaatgcag

Basic information

species Glycine max
transcript GLYMA03G37930.1
intron # 26
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13311856|gb|BG405507.1|BG405507
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGT
EST: gi|18732914|gb|BM527320.1|BM527320
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|58023167|gb|CX709908.1|CX709908
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|21285375|gb|BQ473246.1|BQ473246
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|18719223|gb|BM523146.1|BM523146
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|31463124|gb|CD405152.1|CD405152
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|10845877|gb|BF068909.1|BF068909
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|17401696|gb|BM178478.1|BM178478
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|120491295|gb|EH219462.1|EH219462
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|21675654|gb|BQ628005.1|BQ628005
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAT                         TATTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|51345184|gb|CO985917.1|CO985917
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTATAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
EST: gi|37995553|gb|CF807142.1|CF807142
EST:     AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAG                         GAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT
genomic: AGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttctt ... tacaatgcagGAGTTGACTCCGGCACCAGTATTCCCTCTTATAGTTGCATTTCTAGTTGTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTTAAATTTGAATCTGATATCATTGAGGTTGACTTGGAGAAAAATGTTCAGATCCATGTTGGTCCAATGAGATACAGGATTGAAGATCAGCTGAAGCAGgtttcttcttttgtctctaccctttctagttttgtctgccttttttttttcaaagttcgccatgaactattttctgttttcttctgttgctgcggctcatgtattttttattcttatctcttgtacaatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC