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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACTCGGAAAACTGGAAGTCCTCTCATTTGACAAAAGGAACTATCATGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaacttttccaaggatatatatctatagtctatagcactcttgactctttttgtctcaaactaaaatgttttgcag

Basic information

species Glycine max
transcript GLYMA02G05240.1
intron # 26
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|308097944|gb|HO761115.1|HO761115
EST:     TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
EST: gi|58024762|gb|CX711503.1|CX711503
EST:     TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
EST: gi|15337287|gb|BI497943.1|BI497943
EST:     TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
EST: gi|58021123|gb|CX707865.1|CX707865
EST:     TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
EST: gi|51338433|gb|CO982299.1|CO982299
EST:     TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
EST: gi|31456087|gb|CD398115.1|CD398115
EST:     TGGATCCCAATTACAGCTTGCCTCCCCATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
EST: gi|58017781|gb|CX704523.1|CX704523
EST:     TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
EST: gi|192326055|gb|FK016222.1|FK016222
EST:     TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
EST: gi|15285854|gb|BI469745.1|BI469745
EST:     TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAG                         GAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG
genomic: TGGATCCAAATTACAGCTTGCCTCCCAATATTGCTCTGATAACTCTTGAGgtagagcaac ... tgttttgcagGAGTTGGATGGTGGAATTGTGCTTCTCCGTTTGGCACATCTATACGAG