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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag

Basic information

species Glycine max
transcript GLYMA01G38580.1
intron # 26
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
lower sequence: LOC_Os11g01380.1 (Oryza sativa), 5'ss of exon 26
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagtt-atggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag
||||||||||||  |||||||||| || || ||||| || |||||||| |||||  | ||| ||||||||||||||||||||||||||||||| || ||||| || |  | |||| |  |    | |  ||   |||      || |    |     | || ||    |||    ||||  || | |    |||||  |                    
AGCTTTGAATGAGCTTTATGTTGAAGAGGAGGACTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAAAAGgtaaagc--gattatatgat----tgtactgcttattgatgttatttttccttttttattttattttgaataactaatggctggaatgcc-ttgatcag--------------------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
lower sequence: LOC_Os12g01390.1 (Oryza sativa), 5'ss of exon 26
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag
| ||||||||||  |||||||||| || || || || || |||||||| |||||  | ||| ||||||||||||||||||||||||||||||| |||||||| || |  | |||  |  |    | |  ||   |||      || |    |       ||||    |||    ||||  || | |    |||||  |                    
ATCTTTGAATGAGCTTTATGTTGAAGAGGAGGATTATGAGAGACTCCGTGAATCGGTTGATATGCATGACAACTTTGATCAGATAGGTCTTGCCCAGAAGgtaaagc--gattagatgat----tgtactgcttattgatgttatttttccttttttttttattttgaataactaatggctggaatgcc-ttgatcag--------------------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 3
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaa--caatacatgagcag
||| ||||| ||| |||||||||| || ||||||||||| |||||||| |||||| | ||| |||||||||||||||| || ||||||||||| ||||||||  |     |  |  |    ||||    || | ||| ||     |||   |   | | |  ||  |    ||   |   ||  || | ||| | |  | |     || | |  ||||||
AGCCTTGAACGAACTTTATGTTGAAGAGGAAGACTACGAGAGACTCCGTGAATCAGTTGATATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaatagccagata--atcttgcagtgcctatt-gctgctgctgttgtt--gtaatcgtgcgatgcatattgttactgctttttaatttaataacctgtgtccatttctggagcag

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 3
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag
||| ||||||||  |||||||||| || |||||||| || |||||||| |||||| | ||  |||||||||||||||| || ||||||||||| ||||||||  |   | |  |  |      |   | |     ||     |||    | |  |    |||| |     |||   | ||  | |||  |||   ||  ||||    | | |||||||
AGCCTTGAATGAGCTTTATGTTGAAGAGGAAGACTATGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaacagccagatgcgcagtgcctattgttgttgttgtaat----ggtgtgatgcttattg-----ttactgttttcaattta--attacctgtgttcat---ttcttgagcag

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G062042_T02 (Zea mays), 5'ss of exon 11
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag
||| ||||||||| ||||||| || || || |||||||| |||||||| |||||| | ||  |||||||||||||||| ||||| |||||||| |||||||| ||       ||   |       |    |||| |     || ||  |   |      || |     | | || |||| | ||||  ||||||   |                    
AGCCTTGAATGAACTTTATGTCGAAGATGAGGACTACGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtcgtgcaattcctatcgctaccgcttttaatttaat-aacatgtgttaatt--tattgagcag--------------------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 25
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaatta-gcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag
||| ||||||||  ||||||| || || || |||||||| |||||||| |||||| | ||  |||||||||||||||| ||||| |||||||| |||||||| ||       ||   |       |    |||| |   ||||   |||     |     ||      |||  |  |||| | ||||  ||||||   |                    
AGCCTTGAATGAGCTTTATGTCGAAGAGGAGGACTACGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtcgtgcaattcctgtcgctaccgcttttaatttaat--agcatgtgttaatt--tattgagcag--------------------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
lower sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 11
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagttatggaaaatttaaaatgtttgaattattattgattggcttcaacaatacatgagcag
                            || ||||| || |||||||| |||||| | ||   ||||||||||||||| ||||| |||||||| |||||||| ||       ||   |       |    |||| |     || ||  |   |      || |     | | || |||| | ||||  ||||||   |                    
----------------------------GAGGACTATGAGAGACTCCGTGAATCAGTTGACACGCATGACAACTTTGACCAGATTGGTCTTGCCCAGAAGgtaaaataaaaataaaat-------agccagacagtcgtgcaattcctatcgctaccgcttttaatttaat-aacatgtgttaatt--tattgagcag--------------------

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 26
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 26
AGCTTTGAATGAAATTTATGTTGAGGAAGAAGACTACGACAGACTCCGAGAATCAATAGATTTGCATGACAACTTTGATCAGATAGGTCTTGCACAGAAGgtgaatctcggttatcttttgtcttattttgacaattagcaaaatctgagatcaggaagt-tatggaaaattta---aaatgtttgaattattattgattggcttcaacaatacatgagcag
||| || ||||  ||| |||| ||||| || ||||| || ||||| || |||||||||||| ||||||| |||||||| |||||||| ||||||||||||||||      |  ||    | | || | || |   || | |   |     | ||| |  | ||   || || ||   |   || || |                                  
AGCATTAAATGGTATTCATGTAGAGGAGGAGGACTATGATAGACTTCGGGAATCAATAGATATGCATGATAACTTTGACCAGATAGGCCTTGCACAGAAGgtgag----agagattgaatttattttgttaatg-ttggtaggcttcataagcagaacatgtacataagatctagtgatgcgtgtggacag-------------------------------