1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
AGCTTTTCTTGCCTTGGCTAAGGAACAATCTCGTGAAATTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAGgtactataactattattcaattttaaacataagtagaatggacatcttacaaaaaaagtaactgtgttaagtcttaattcagttcatcaaatttgctcac...
species | Glycine max |
transcript | GLYMA17G20310.1 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
EST: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAG GAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAAEST: gi|26045829|gb|CA783296.1|CA783296
genomic: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAGgtactataac ... attattgcagGAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
EST: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAG GAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAAEST: gi|11412854|gb|BF424865.1|BF424865
genomic: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAGgtactataac ... attattgcagGAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
EST: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAN GAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAAEST: gi|254315941|gb|GR825750.1|GR825750
genomic: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAGgtactataac ... attattgcagGAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
EST: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAG GAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
genomic: CTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAGgtactataac ... attattgcagGAAATTGGACGTCTGCAAAAAGTCCATGGTCCAAGTGCAATAAGTGCAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTTTCTTGCCTTGGCTAAGGAACAATCTCGTGAAATTGATATAAAAGCTCAAGCAACAATCTGTGCTCAATACAAGATTGCAGTCACTCTTCTTCAGgtactataactattattcaattttaaacataagtagaatggacatcttacaaaaaaagtaactgtgttaagtcttaattcagttcatcaaatttgctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaag