Sequence
atgc intronic sequence ATGC exonic sequenceAGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGgtatattctctaaccttgaaacaactccttataaattttcactgtgttatgaaatctcatcttcaataaaaaacttgtatttggtgcacggaaattggaa...
Basic information
species | Glycine max |
transcript | GLYMA16G32830.1 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G32830.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G082855_T02 (Zea mays), 5'ss of exon 23
AGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGgtatattctctaaccttgaaacaactccttataaattttcactgtgttatgaaatctcatcttcaataaaaaacttgtatttggtgcacggaaattggaa-
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AGGAACCTCGTCAGCCTCCACGGCTTCTCGCTCTCCCCTCACGGGAACCTGCTGTTCTACGACTACATGGAGAACGGCTCCCTGTGGGATCTTCTCCATGgtg-aggccgggttcctgagctctctttcttttttttttcttaat-tcatgtcgcttcgtcctt--ccgataacccac----gggccacggccattcccag
upper sequence: GLYMA16G32830.1 (Glycine max), 5'ss of exon 25
lower sequence: AT5G62230.2 (Arabidopsis thaliana), 5'ss of exon 23
AGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGgtatattctctaaccttgaaacaactc--cttataaattttcactgtgttatgaaatctcatcttcaataaaaaacttgtatttggtgcacggaaattggaa
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AGAAACATAGTCAGCTTGCATGGATATGCCTTGTCTCCTACTGGCAACCTTCTTTTCTATGACTACATGGAAAATGGATCACTTTGGGACCTTCTTCATGgtaagttcttctaactttttttggttcaatttgtgaaagattgatttgcagataaacggtaaaaatgttttgatttttat-tttcttgaaaag---------
upper sequence: GLYMA16G32830.1 (Glycine max), 5'ss of exon 25
lower sequence: AT5G07180.1 (Arabidopsis thaliana), 5'ss of exon 25
AGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGgtatattctctaaccttgaaacaactccttataaattttcactgtgttatgaaatctcatcttcaataaaaaacttgtatttggtgcacggaaattggaa
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AGAAACATAGTAAGCTTGCACGGATACGCCTTATCTCCCTTTGGCAACCTCCTCTTCTACGACTACATGGAAAATGGCTCTCTTTGGGATCTTCTCCATGgtttgctattcttctt--------ctcttggaccagttacgttcttttcagccagttttctacttttggaagacttaaacgtagtgattgtatgatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|7686095|gb|AW756743.1|AW756743EST: TCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATG GTCCCTCGAAAAAGGTAAAACTTGATTGGGAGGCACGCATGAGGATTGCCG
genomic: TCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGgtatattctc ... tatctgacagGTCCCTCGAAAAAGGTAAAACTTGATTGGGAGGCACGCATGAGGATTGCCG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGGAATCTTGTCACTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTTTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTTCATGgtatattctctaaccttgaaacaactccttataaattttcactgtgttatgaaatctcatcttcaataaaaaacttgtatttggtgcacggaaattggaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataaaaaa