1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' | 26 5' 3' | 27 5' 3' | 28 5' 3' | 29 5' 3' | 30 5' 3' | 31 5' 3' | 32 5' 3' | 33 5' 3' |
GATGTCATTCGGCTAAGCTTTTTCTCTCAACCCGATGGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGGgtatgtgagtatgtttgtagtcctaacatggtttaaatgtctccttgtgttgttgtgttgacttttacttattggtag
species | Glycine max |
transcript | GLYMA16G30190.2 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
EST: TCATCACTAGTTCCAGG TATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAEST: gi|15813512|gb|BI785787.1|BI785787
genomic: TCATCACTAGTTCCAGGgtatgtgagt ... ttattggtagTATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAA
EST: GGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGG TATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAEST: gi|6227802|gb|AW156401.1|AW156401
genomic: GGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGGgtatgtgagt ... ttattggtagTATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAA
EST: GGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGG TATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAEST: gi|14126584|gb|BG791022.1|BG791022
genomic: GGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGGgtatgtgagt ... ttattggtagTATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAA
EST: CTAGTTCCAGG TATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAEST: gi|7691707|gb|AW759830.1|AW759830
genomic: CTAGTTCCAGGgtatgtgagt ... ttattggtagTATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAA
EST: GGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGG TATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAEST: gi|19453651|gb|BM955061.1|BM955061
genomic: GGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGGgtatgtgagt ... ttattggtagTATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAA
EST: GGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGG TATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAAEST: gi|254334421|gb|GR844206.1|GR844206
genomic: GGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGGgtatgtgagt ... ttattggtagTATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAA
EST: GGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGG TATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAA
genomic: GGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGGgtatgtgagt ... ttattggtagTATAAAAGAAGGAATATATCTCGGTCCACCACCAAAAGAAAAGCTTCCCAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGTCATTCGGCTAAGCTTTTTCTCTCAACCCGATGGCCCGCTGATGGGAAATGGTTCCTTTAAGTCCTCATCACTAGTTCCAGGgtatgtgagtatgtttgtagtcctaacatggtttaaatgtctccttgtgttgttgtgttgacttttacttattggtag
- - - - - - - - - - - - - - - - - - - - GCTGAT