Sequence
atgc intronic sequence ATGC exonic sequenceCGGAATTTGGTCAGTCTCCAAGGCTACTCCTTGTCCCCATATGGCCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtaagtttacgctatttttttttttcacttttgcagacatgcatggaaccctttatttagaaggtatctgtctcaatctcctcttttaaatagctgatta...
Basic information
species | Glycine max |
transcript | GLYMA14G11220.2 |
intron # | 25 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA14G11220.2 (Glycine max), 5'ss of exon 25
lower sequence: LOC_Os02g53720.1 (Oryza sativa), 5'ss of exon 4
CGGAATTTGGTCAGTCTCCAAGGCTACTCCTTGTCCCCATATGGCCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtaagtttacgctatttttttttttcacttttgcagac-atgcatggaaccctt--tatttagaaggtatctgtctcaatctcctcttttaaatagctgatta
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CGGAATCTTGTCAGCCTTCAAGGGTATTCCCTATCACCTGCTGGGAATCTTCTCTTCTACGACTACTTGGAAAATGGCAGTCTCTGGGATGTTTTACATGgtaagtgaattttacatggcaaacaaatacataggaactgtaagcagaatagttggtatttagaacgattgttcttctggtttgtatagccgttgcctgt---
upper sequence: GLYMA14G11220.2 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G463904_T03 (Zea mays), 5'ss of exon 25
CGGAATTTGGTCAGTCTCCAAGGCTACTCCTTGTCCCCATATGGCCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtaagtttacgctatttttttttttcacttttgcagacatgcatggaaccctt--tatttagaaggtatctgtctcaatctcctcttttaaatagctgatta
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CGGAATCTTGTAAGCCTTCAGGGGTACTCCCTGTCACCATCTGGGAATCTCCTCTTCTATGATTACATGGAAAATGGCAGCCTCTGGGACATTTTACATGgtgagtgcagattgctaaaacatttc--tcacacagaaatgcagaatacatttgggagtaaggctgcacataacaccattttctttttggcaaagggcatag
upper sequence: GLYMA14G11220.2 (Glycine max), 5'ss of exon 25
lower sequence: AT2G26330.1 (Arabidopsis thaliana), 5'ss of exon 25
CGGAATTTGGTCAGTCTCCAAGGCTACTCCTTGTCCCCATATGGCCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtaagtttacgctatttttttttttcacttttgcagacatgcatggaaccctttatttagaaggtatctgtctcaatctcctcttttaaatagctgatta
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AGAAATCTTGTGAGCCTACAAGCTTATTCCCTCTCTCACTTGGGGAGTCTTCTGTTCTATGACTATTTGGAAAATGGTAGCCTCTGGGATCTTCTTCATGgtaagtct-----------catcgccaaacatagaaa-attatttgaatcttctgtgacataacaacttgctt--gtgtgttttgtaaag----------
upper sequence: GLYMA14G11220.2 (Glycine max), 5'ss of exon 25
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 25
CGGAATTTGGTCAGTCTCCAAGGCTACTCCTTGTCCCCATATGGCCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtaagtttacgctatttttttttttcacttttgcagacatgcatggaaccctttatttagaaggtatctgtctcaatctcctcttttaaatagctgatta---------
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AGGAATCTGGTCTGTCTACAAGGATATTCCCTGTCCCCTTCTGGGAACCTACTCTTCTATGACTACATGGAAAATGGCAGTCTCTGGGATCTACTTCATGgtaagtttaaact----ttcctgaacaatatggtgctc-----tgcaagtctgatctgaaaaaatatttatcacttaaatgggtgctaaatgtgtgtcaagaagtgtgaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|15287884|gb|BI471775.1|BI471775EST: CCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATG AAGAAAAAGCTTGACTGGGAGCTGCGTCTAAAAATAGCACTTGGAGCAGCA
genomic: CCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtaagtttac ... acctaccaagAAGAAAAAGCTTGACTGGGAGCTGCGTCTAAAAATAGCACTTGGAGCAGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CGGAATTTGGTCAGTCTCCAAGGCTACTCCTTGTCCCCATATGGCCATCTCCTGTTTTATGACTACATGGAAAATGGCAGTCTATGGGATCTTCTTCATGgtaagtttacgctatttttttttttcacttttgcagacatgcatggaaccctttatttagaaggtatctgtctcaatctcctcttttaaatagctgatta
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