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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatgaatattggcaaaaatttcattagatatcagttgttgcatgccataacactaatgggaaatttcattgatatgctatag

Basic information

species Glycine max
transcript GLYMA14G06340.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 2
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgt-aggatgaatattggcaaaaatttcattagatatcagttgttgcatgccataacactaatg-----ggaaatttcattgatatgctatag---------
||||||||| ||| |||||||||| ||||| ||||||||| | ||||| || |||||||||||| | || ||| |  | ||||| ||||| ||||| ||||| || ||    || |  |   ||||| ||||    |  |   |  | ||| |    | |||        |||| | | ||   || |             
TCACTTCTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatggaaatttatttccttagcgcactttgaatagaagccctgtttcaaattccttccaaaatcttactgtcttgttgctctttggacag

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 2
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtagg-------atgaata---------ttggcaaaaatttcattagatatcagttgttgcatgccataacactaatgggaaatttcattgatatgctatag----
||||||||| ||| | |||||||| ||||| ||||||||| | ||||| || |||||||||||| | || ||| |  | ||||| ||||| ||||| |||||  |       ||||| |         || ||  |  ||  ||   |   | ||| |   || || |  | | ||     | ||   ||| |   || | |    
TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacag

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 24
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatgaatattggcaaaaatttcattagatatcagttgt-tgcatgccataacactaat------gggaaatttcatt---gatatgctatag----
|||||| ||  || |||||||||| ||||| ||||||||| | || ||||| |||||||||||| | || ||  |    ||||| ||||| ||||| |||||  |      ||||  ||    ||| |    |     |||  |  | ||| |    | | |         |||| | |||   | |   || | |    
TCACTTTTATCTGCAAGAGCATCCTGATCTCATCAATGATATGCTAAACGTGCTTGCACTTCGTTTAGATCACACCATAGTTGTAGACATAATGCGCAAGgttagcatctgattgaaaatctattcctgcagtgcactttgaatagaagccctgtttcaattccgtcccaaaaatctgattcttgttgctctttggacag

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 10
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatgaatattggcaaaa-atttcattaga----tatcagttgttgca-tgccataacactaatgggaaatttca---ttgatatgctatag-------------------------------------------------------------------------------------------------------
||| || || ||| |||||||||| ||||| ||||||||| | || ||||| |||||||||||| | || ||  |  | ||||| ||||| ||||| |||||| |      ||||  ||   |||||   ||     | | | | |  ||  ||    ||  |       |||| | |   ||| |   || | |                                                                                                       
TCAGTTTTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTAAACGTGCTTGCACTTCGTTTAGATCACACCAGAGTTGTAGACATAATGCGCAAGgtaagcatctgattgaaaatctatttctgcagtgcactttgaatagaagccctgtttcaattcctcccaaaaatctgattcttgttgctctttggacaggctggtcagttgcatcttgtgaaaccatatatggttgcaattcagagtaacaatgtctctgccatgaatggagccttgaatgagctttatgtctgagag

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 25
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 25
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatgaatattggcaaaa--atttcattagatatcagttgttgcatgccataacactaatgggaaatttcattgatatgctatag
 |||||||||||| |||||||||| ||| | ||||| ||| |||| ||||| |||||  | ||  | |||||| | ||||||||||| || |||||||||||  || |   | ||   |     |||  ||  |||  |     ||     ||| ||  |||       |||| ||   ||   |   
GCACTTCTACTTGCAAGAGCATCCGGATATAATCAACGATCTTCTCAACGTACTTGCGTTGCGGTTAGACCATACTCGTGTTGTTGATATAATGCGGAAGgttagaagctgactgatgactttgtttttttctataaaaacaactgagctacattac-ttaacaattggtttc-ttctgatctcag--

upper sequence: GLYMA14G06340.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtagg-atgaatattggcaaa---aatttcattagatatcagttgttgcatgccataacactaatgggaaatttca----ttgatatgctatag----------------------------
 ||||| |||||| |||||||||| ||||| || |||||| |||| || || ||||||||||| || |||||| | ||||| |||||||| |||||||||||     |   |  ||||        || | ||     ||   ||  | |||  |      |  | |    ||  |    || || | || |                              
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|298199409|gb|HO042772.1|HO042772
EST:     TCCTTGCACTTCATGTGGACCATGCACGTGTTGTTGACGTCATGCGGAAG                         GCTGGTCACCTCCGTCTTGTGAAACCGTATATGATTGCAGTTCAAAGC
genomic: TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatgaa ... tatgctatagGCTGGTCACCTCCGTCTTGTGAAACCGTATATGATTGCAGTTCAAAGC
EST: gi|6481487|gb|AW200758.1|AW200758
EST:     TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAG                         GCTGGTCACCTCCGTCTTGTGAAACCGTATATGATTGCAGTTCAAAGCAAC
genomic: TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatgaa ... tatgctatagGCTGGTCACCTCCGTCTTGTGAAACCGTATATGATTGCAGTTCAAAGCAAC
EST: gi|208310285|gb|GE105533.1|GE105533
EST:     TCCTTGCACTTCACGTGGACCATGCACGTGTTGTTGACATCATGCGGAAG                         GCTGGTCACCTCCGTCTTGTGAAACCGTATATGATTGCAGTTCAAAGCAAC
genomic: TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatgaa ... tatgctatagGCTGGTCACCTCCGTCTTGTGAAACCGTATATGATTGCAGTTCAAAGCAAC