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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTGAGTGTTTCAAACCTTAGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgctttgtttggcaattgacagacttctatcacactttggatgatacttgttattgttttcagttttctcaattttaatttatgacaagttacaaa...

Basic information

species Glycine max
transcript GLYMA13G44420.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA13G44420.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv09s0002g08370.t01 (Vitis vinifera), 5'ss of exon 24
ATGCCAGCTTTTTAGATGCAACAGTCTGTGTATTGAGTGTTTCAAACCTTAGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaat-gctttgtttggcaattgacagacttctatcacactttggatgatacttgttattgtttt-cagttttctcaattttaatttatgacaagttacaaa----
||||||| || ||||||||||| ||||||||||| |||| | |||| || ||  |||| ||||| || |||||| |||| || ||| |||| ||||||||||| |  ||||| |  |     | |    |   ||   | |||| |  ||     ||||  |  | || |  | | || ||   ||| |  ||| ||| ||     
ATGCCAGTTTCTTAGATGCAACTGTCTGTGTATTCAGTGCTGCAAATCTCAGGCTACGATGTCGTATTAATCCTACTGCTTACCTTCCTGCCAGTGTCAGgtatttactttgctctgtg---ggccaggtgggatt-tattttgaaaaatctcctttatcttgatacaatgcttttaagtt-ggtttgtttcaa-ttataattatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5605908|gb|AI900006.1|AI900006
EST:     AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
EST: gi|23063724|gb|BU578610.1|BU578610
EST:     AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
EST: gi|12496989|gb|BG047341.1|BG047341
EST:     AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
EST: gi|8670275|gb|BE191382.1|BE191382
EST:     AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
EST: gi|19937480|gb|BQ081305.1|BQ081305
EST:     AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
EST: gi|11413067|gb|BF425008.1|BF425008
EST:     GATTACAGT-GTCGAATCAATCCTTCTGCTTATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: GATTAC-GTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
EST: gi|8402988|gb|BE058622.1|BE058622
EST:     AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
EST: gi|207837214|gb|GD808834.1|GD808834
EST:     AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: AGATTACGTTGTCGAATCAATCCTTCTGCATATCTTTCTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
EST: gi|209726518|gb|BW658085.1|BW658085
EST:     CTGCAAGTGTCAG                         TTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA
genomic: CTGCAAGTGTCAGgtaatgcttt ... tatgctgcagTTCTAACGTACAACCACTTGTTATTGCTGCACATCCTCAAGAACCAAACCA