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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCCAATCCTAACAATCTTGTTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacatatgttgaactacatatctttcatcgcagtccctagtccctacaactagtatggttgtgacttcttaaataatctaatattaatataaaag...

Basic information

species Glycine max
transcript GLYMA12G30520.1
intron # 25
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192307606|gb|FG999645.1|FG999645
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
EST: gi|192307607|gb|FG999646.1|FG999646
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
EST: gi|21286017|gb|BQ473888.1|BQ473888
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGATATTAACCCAGCTGCGAATGACGGT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACA-GAACCCAGCTGCGAATGACGGT
EST: gi|4283486|gb|AI440662.1|AI440662
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCT
EST: gi|10231964|gb|BE800852.1|BE800852
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
EST: gi|151404341|gb|EV274151.1|EV274151
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
EST: gi|151400490|gb|EV270304.1|EV270304
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
EST: gi|51334703|gb|CO978569.1|CO978569
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
EST: gi|298170085|gb|HO018709.1|HO018709
EST:     TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTA                         GTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT
genomic: TTGTGAGTACAACATTTTATTCAGAAAGTACAAGGGCAATGCTTTGTTTAgtaagtacat ... tgatgtgcagGTAAGAATTGAAACAGATCCAGCAGACAGAACCCAGCTGCGAATGACGGTT