Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtttgaatctatgattacgtattatgcctttttttctctcacgtggaattgtttgcttttttttttttttttgttaaccttgtttttactgtcttgaaaaaattattgatggcag

Basic information

species Glycine max
transcript GLYMA11G38160.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G38160.1 (Glycine max), 5'ss of exon 25
lower sequence: LOC_Os01g73530.1 (Oryza sativa), 5'ss of exon 24
GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtttgaatctatgattacgtattatgcctttttttctctcacgtggaattgtttgcttttttttttttttttgttaaccttgtttttactgtcttgaaaaaattattgatggcag
|| || |||||||||||    || |||||||||||||| |||||||| |||||||||||   |   |||  ||   || | | |   |||   | |       |    |   |   | || |      |  | |                                      
GCTCGTTTGTTCTTCCACTGTCCAAAATTTGGTATCCTAGACGAGTGCACCAAgtatgt---agcgtatagttttttaatgttctcatttccattttttaccaataaatgcacagctcttataaagcatactcattgcag--------------------------------

upper sequence: GLYMA11G38160.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G060045_T01 (Zea mays), 5'ss of exon 23
GCACGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtttgaatctatgattacgtattatgcctttttttctctcacgtggaattgtttgcttttttttttttttttgttaaccttgtttttactgtcttgaaaaaattattgatggcag
|| || ||||| |||||| | ||||| |||||||||||||||||||| |||||||| || |   ||| |     |  | | | ||||||  | | |  | |            |  || | | || |   |||   | | || ||   |||||      ||  |||| ||||
GCTCGTTTGTTTTTCCATCATCCTAAGTTTGGTATCCTGGACGAGTGCACCAAgtacgtgt---tctgt-----cacaatgttccttttgatttattgcat-----------ttccttctctcttatcaattactgtgggttctaaattcttgc-----ttgatgattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193671127|gb|FK613249.1|FK613249
EST:     CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA                         TGCAACAAGCGTTGATGTGGAAGAACACCTATATGGGCTAGCGAACAAAAT
genomic: CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtttga ... ttgatggcagTGCAACAAGCGTTGATGTGGAAGAACACCTATATGGGCTAGCGAACAAAAT
EST: gi|18712534|gb|BM522649.1|BM522649
EST:     CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA                         TGCAACAAGCGTTGATGTGGAAGAACACCTATATGGGCTAGCGAACAAAAT
genomic: CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtttga ... ttgatggcagTGCAACAAGCGTTGATGTGGAAGAACACCTATATGGGCTAGCGAACAAAAT
EST: gi|7234108|gb|AW569448.1|AW569448
EST:     CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAA                         TGCAACAAGCGTTGATGTGGAAGAACACCTATATGGGCTAGCGAACAAAAT
genomic: CGCTTGTTCTTCCATAAGCCTAAATTTGGTATCCTGGACGAGTGTACCAAgtatgtttga ... ttgatggcagTGCAACAAGCGTTGATGTGGAAGAACACCTATATGGGCTAGCGAACAAAAT