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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGgttagctgcatttattcttcatgttgactatttttcagttcaattataggaaaccagtggattattattatttggaatgcag

Basic information

species Glycine max
transcript GLYMA11G35460.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 3
AGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGgt------tagctgcatttattcttcatgttgactatttttcagttcaattataggaaaccagtggat--tattatta-tttggaatgcag-------------------------
|||| |||| ||| | |||||||| ||||||||||| || ||| | || || ||| ||||| ||||||| ||||||||||||||||| ||||| ||||||||      ||||   ||    |     ||   | |  |  |   |    || ||      |  || ||  | ||| |  |||  |||  |                          
AGCCTTGAACGAACTTTATGTTGAAGAGGAAGACTACGAGAGACTCCGTGAATCAGTTGATATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaatagccagataatcttgcagtgcctattgctgct-gctgttgttgtaatcgtgcgatgcatattgttactgctttttaatttaataacctgtgtccatttctggagcag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 3
AGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGgttagctgcatttattcttcatgttgactatttttcagttcaattataggaaaccagtggattattattatttggaatgcag-------------------------
|||| |||||||  | |||||||| |||||||||||||| ||| | || || ||| ||||  ||||||| ||||||||||||||||| ||||| ||||||||      ||   |   | |    || ||||| ||  |||    ||  ||      |   ||| ||| | |||  |||  |                          
AGCCTTGAATGAGCTTTATGTTGAAGAGGAAGACTATGAGAGACTCCGTGAATCAGTTGACATGCATGACAACTTTGACCAAATAGGTCTTGCCCAGAAGgtacaaaacagccaga-tgcgcagtgcctattgtt--gttgttgtaatggtgtgatgcttattgttactgttttcaatttaattacctgtgttcatttcttgagcag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 25
lower sequence: AT3G11130.1 (Arabidopsis thaliana), 5'ss of exon 26
AGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGgttag---ctgcatttattcttcatgttgactatttttcagttcaattataggaaaccagtggattattattatttggaatgcag---
||| |||||||| |||||||  || || ||||||||||| || ||||||||||| |||||||||||||| |  |||||||| ||||| || || |||||||| ||    |  || |||   ||  ||  || |||| |   | |  |||    | || | |  ||  ||||    |||   | |    
AGCTCTGAATGAGATATATGCAGAAGAAGAAGACTATGACAGGTTGCGCGAGTCTATTGATTTGCATGACAGTTTTGACCAGATAGGTCTCGCTCAGAAGgtaagagtttaaatctatctatcgagtacac-atttatatttcccctta---aatactaatttatcgttatgggatggtgcgaaatag

upper sequence: GLYMA11G35460.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 26
AGCCCTGAATGAAATATATGTTGAGGAGGAAGACTATGATAGATTGCGCGAGTCAATTGATTTGCATGATAACTTTGACCAAATAGGCCTTGCACAGAAGgttagctgcatttattcttcatgttgactatttttcagttcaattataggaaaccagtggattatta---ttatttggaatgcag--------
 ||  ||||||  || ||||||||||||||||||||||| ||| |||| || ||||||||| |||||||||||||||| || || |||||||||||||||||    |  | ||  | |   ||   | | ||||||  |    || || | |     ||  ||  ||    |  |||| |||           
GGCTTTGAATGGGATTTATGTTGAGGAGGAAGACTATGACAGACTGCGTGAATCAATTGATATGCATGATAACTTTGATCAGATTGGCCTTGCACAGAAGgtggagtataatttctttaggtgc-aattgtttttctttgtggttctatgcactggttgatttcataagccttgttggtatgtgtttgagcag