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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATGgtatgacataacgcagaaatcaagaaaaacatgccagaggagtatgagtatgtttgcagacttgtaatttctctcttatttgcaagttgaatgcaactaatatggcag

Basic information

species Glycine max
transcript GLYMA11G27410.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 25
lower sequence: LOC_Os05g07130.2 (Oryza sativa), 5'ss of exon 19
ATACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATGgtatgacataacgcagaaatcaagaaaaacatgccagaggagtatgagtatgt-ttgcagacttgtaatttctctcttatttgcaagttgaat-----gcaactaatatggcag---------------------------------
|||||||||||||| ||||||||||||||| | |||||||||||||| ||||| ||  | ||| || ||||||   ||||| ||||| | |||||||||  |   |   | |   ||  |  || ||||  ||||   |     | |  | | |||                                     
ATACAATGGCGTGCTCTTGATGAGATAAACTCTGGGGTGTGTGATGGGATGACGTA-TGAAGAGATAAAGAAAGTTATGCCCGAGGAATTTGAgtatgtgctattgttatctttgtttacatttgtttgggagttctttctttagtagtttacatgatgtgcccatctgctagactgctgattgtcaatttgt

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 25
lower sequence: LOC_Os03g18310.2 (Oryza sativa), 5'ss of exon 18
ATACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATGgtatgacataacgcagaaatcaagaaaaacatgccagaggagtatgagtatg----tttgcagacttgtaatttctctcttatttgcaagttgaatgcaactaatatggcag------------------------------------
||||||||||||||||||||||| |||||||| ||  | |||||||| ||||| ||  |  ||||| |||||||  |  || || || |||||||| |    ||    || ||    ||| | |  | |||   | |||||   | ||  | | |||                                     
ATACAATGGCGTGCACTTGATGAAATAAACGCTGGCATCTGTGATGGGATGACGTA-TGATGAAATAAAGAAAATTAAACCTGAAGAATATGAgtacgcaaattcattgattttccttttgttttgtttttttca-ttgaagctatcttttgttgcatttgttctttgagtaagcccatgtcctgccaagtaaa

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G824405_T02 (Zea mays), 5'ss of exon 17
ATACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATGgtatgacataacgcagaaatcaagaaaaacatgccagaggagtatgagtatgtttgcagacttgtaatttctc-tcttat-ttgcaagttgaatgcaactaatatggcag-------------------------------------
|||||||||||||| ||||||||||| || || ||||| |||||||| |||||||| ||  ||||| |||||||  |  || || || |||||||| ||      |||  ||   |  | | |||| ||  ||  |       |  | | || ||                                      
ATACAATGGCGTGCTCTTGATGAGATCAATGCTGGGGTCTGTGATGGGATGACATA-CGATGAAATAAAGAAAAGTAAACCTGAAGAATATGAgtacgtgaattcactgatatcatgacattttatattaaaaaatccccctgatcactctgtcactcagaattttgttcagctgtgggtgtgtgttggtgct

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G021846_T01 (Zea mays), 5'ss of exon 19
ATACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATGgtatgacataacgcagaaatcaagaaaaacatgccagaggagtatgagtatgtttgcaga--cttgtaatttctc-tcttatttgcaagttgaatgcaactaatatggcag-------------------------------------------------------------------------------------------------------------------------
|||||||||||||| ||||||||||| ||  | || ||||||||||| ||||| ||  | ||| || ||||||| |||||| ||||| | |||||| || |  |||   || |  ||| |  |  || |||||   ||          ||  |  |                                                                                                                          
ATACAATGGCGTGCTCTTGATGAGATCAATTCTGGAGTGTGTGATGGGATGACTTA-TGAAGAGATAAAGAAAATCATGCCCGAGGAATTTGAgtacgtataaagaaaattttgctttattgttgtagttgcaccatgtgcatggaatatccgttacttaccattcatatatgaggtgttagaccaatgtttcatttccatgctgtacaaattaggaaaaaacagaaatgaaattaacacaaatccttttggcacttgtgaatgcttgtttcaaccag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G021846_T02 (Zea mays), 5'ss of exon 18
--------ATACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATGgtatgacataacgcagaaatcaagaaaaacatgccagaggagtatgagtatgtttgcaga--cttgtaatttctc-tcttatttgcaagttgaatgcaactaatatggcag-------------------------------------------------------------------------------------------------------------------------
        |||||||||||||| ||||||||||| ||  | || ||||||||||| ||||| ||  | ||| || ||||||| |||||| ||||| | |||||| || |  |||   || |  ||| |  |  || |||||   ||          ||  |  |                                                                                                                          
ATTTGTAGATACAATGGCGTGCTCTTGATGAGATCAATTCTGGAGTGTGTGATGGGATGACTTA-TGAAGAGATAAAGAAAATCATGCCCGAGGAATTTGAgtacgtataaagaaaattttgctttattgttgtagttgcaccatgtgcatggaatatccgttacttaccattcatatatgaggtgttagaccaatgtttcatttccatgctgtacaaattaggaaaaaacagaaatgaaattaacacaaatccttttggcacttgtgaatgcttgtttcaaccag

upper sequence: GLYMA11G27410.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 19
ATACAATGGCGTGCACTTGATGAGATAAACGCAGGGGTGTGTGATGgtatgacataacgcagaaatcaagaaaaacatgccagaggagtatgagtatg-----------tttgc-----agactt-------gtaatttctctcttatttgcaagttgaatg-caactaatatggcag---------------
||||||||||||||||||||||||||||| || || ||||||||||| ||||||||  | ||| || ||||| |||||||| ||||| || |||||||           ||||      | | ||       ||||||| |||   ||    |      |||  | || ||  | ||                
ATACAATGGCGTGCACTTGATGAGATAAATGCTGGAGTGTGTGATGGAATGACATA-TGAAGAGATAAAGAAGAACATGCCTGAGGAATACGAgtatgagcattttttatttgtttaagaaattttcatgatgtaatttttcttccatgcatacacatgatgatagcttattagacatacttgtcatattaca