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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCACTAGATGGCATTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTCTTTTTATTTTCATATATTCAGGGATTAGCACTCCTTATGATCGTCAGgtgaattccctttctactctgggtgtgttgtgttgaaaaagaaactctggcaatttccttatgacccattaagaatgctgttaacttgagttctgtttcattttctgcag

Basic information

species Glycine max
transcript GLYMA08G40530.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G40530.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv00s0189g00030.t01 (Vitis vinifera), 5'ss of exon 24
GATCACTAGATGGCATTATATTAGTGTTGGTGGAAGTATATTAGCCTGGTTTCTTTTTATTTTCATATATTCAGGGATTAGCACTCCTTATGATCGTCAGgtgaattccctttctactctgggtgtgttgtgttgaaaaagaaactctggcaatttccttatgacccattaagaatgc-tgttaacttgagttctgtttcattttctgcag
 || || || ||||||||||| |||||||  ||||| || ||||| |||||| | || ||||| |||||||||||  |||  |||||||||||||| || |||| |    |||  ||      | | || ||||        |  | ||    |||  |  | | | |   ||  |   || ||| ||   ||||   |   |   |||||
TATTACGAGGTGGCATTATATAAGTGTTGCAGGAAGCATTTTAGCATGGTTTATATTCATTTTTATATATTCAGGTGTTATGACTCCTTATGATCGGCAAgtgagtgatttttaaacc----atttcttttgtttttcttttagttttg----ttttatgtttatctaactagtgtatatgctaattt--cttctcaattcatacatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|20812086|gb|BQ296564.1|BQ296564
EST:     TTCTTTTTATTTTCATATATTCAGGGATTAGCACTCCTTATGATCGTCAG                         GAGAATATTTATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTAC
genomic: TTCTTTTTATTTTCATATATTCAGGGATTAGCACTCCTTATGATCGTCAGgtgaattccc ... ttttctgcagGAGAATATTTATTTTGTCATATATGTCTTGATGAGTACATTCTACTTCTAC