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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTGAAGTACTCCATAGTTGAGCGTCCAGAGAAGATAGATGAGATCATATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGGgtgagtttttaatcaccttactgaatgttgttcaagaaatatagcatgctatgttctttttattggttgcatatttgtgccatactggccgatggttaattagtttgaacttttgctggttgttattatgagtatgcag

Basic information

species Glycine max
transcript GLYMA07G40230.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G40230.2 (Glycine max), 5'ss of exon 25
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 25
TGCTGTGAAGTACTCCATAGTTGAGCGTCCAGAGAAGATAGATGAGATCATATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGGgtgagt--------ttttaatcaccttactg-----aatgttgttcaaga--aatatagcatgctat--gttctttttattggttgcatatttgtgc---catactggccgat----ggt--taattagtt--tgaacttttgctggttgttatt---atgagtatgcag
||| || || || || ||||||||||| |||||||| ||||||||||||||||||||||| || || ||||| || |||||||| |||||| | ||  |||| | |        || ||||   || |        |||||  || || |  | |   | ||  ||   |||   || |||| || | | ||| |      ||  |||  |||    |||  ||||| |||   ||  | ||  |  || | |||   |||  | |||||
TGCCGTAAAATATTCTATAGTTGAGCGGCCAGAGAAAATAGATGAGATCATATACCCTGAGATCTCATCATTCCTAATGCTTATTAAGGATCATGACCGGgtaaataccaaaagttctaatgctctgaaaaggaaaaatgtattttaaaaccatttcggaattttagaggtttacttcattgtttccctctttttctgtatatgttggtagattaatggtagtaattggttgccgatttattagttattctgattgccatggttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208148809|gb|GD948437.1|GD948437
EST:     TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGG                         CATGTTAGGCGAGCTGCTGTTTTGGCTATAAGCACATTTGCACACAATAAG
genomic: TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGGgtgagttttt ... gagtatgcagCATGTTAGGCGAGCTGCTGTTTTGGCTATAAGCACATTTGCACACAATAAG
EST: gi|13789058|gb|BG651649.1|BG651649
EST:     TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGG                         CATGTTAGGCGAGCTGCTGTTTTGGCTATAAGCACATTTGCACACAA
genomic: TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGGgtgagttttt ... gagtatgcagCATGTTAGGCGAGCTGCTGTTTTGGCTATAAGCACATTTGCACACAA
EST: gi|151410822|gb|EV280637.1|EV280637
EST:     TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGG                         CATGTTAGGCGAGCTGCTGTTTTGGCTATAAGCACATTTGCACACAATAAG
genomic: TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAACGATAGGgtgagttttt ... gagtatgcagCATGTTAGGCGAGCTGCTGTTTTGGCTATAAGCACATTTGCACACAATAAG