Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGATTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgtattttccatgaacagaattcttgttctgtgctaaattagacaaccaaatatgagtttgattttaatctgctgttacgaatgtttttatattgtaattg...

Basic information

species Glycine max
transcript GLYMA06G46940.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 25
lower sequence: AT1G30410.1 (Arabidopsis thaliana), 5'ss of exon 25
GGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGATTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgt------attttccatgaacagaattcttgttctgtgctaa-attagacaaccaaatatgagtttgattttaatctgctgttacgaatgtttttatattgtaattg
|||| ||| || ||||||| ||||||| |  |||  |||||| |   |||||| || |  ||||| | |||||||||||||||||||||||||||||| |||       | |       |||  ||| |   ||||| ||   ||||     |  | | ||||  | | |||  | |  |||||                       
GGAAGAATTATGATTGATGATTGTGATGTGGCTAAGTTCGGACTGACAGATGTACGCAGGGTTCTAAGTATCATACCACAATCTCCAGTTCTTTTCTCAGgttcgtgtgtgtatttaagacaacattgtaagtctgttcttgcattatgttgctcattgtgagaatcaatttttttttttgttag----------------------

upper sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv10s0003g04460.t01 (Vitis vinifera), 5'ss of exon 5
GGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGATTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgtattttccatgaacagaattcttgttctgtgctaaattagacaaccaa-atatgagtttgattttaatctgctgttacgaatgtttttatattgtaattg
|||| |||| | |||||||  | ||| ||||| | ||| ||| |   |||| | || |||||| | | ||||||||||||||| ||| |||||||||||||||| |  ||| ||||   | ||    ||      | |    ||| ||  ||     | |  || | ||    ||  |  | |  ||||  | | | | | 
GGAAGAATCTTGATTGATGAGTATGACATTTCAAAATTTGGACTTACAGATCTCCGTAAAGTTTTAAGTATCATACCACAATCACCAATTCTTTTCTCTGgtatgtatcatcaacaacttactatacctactgagagtacttcaagcaccatgcatttctctttctgattatttggcaaaacttcttttgaactatcaat-

upper sequence: GLYMA06G46940.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv10s0003g04470.t01 (Vitis vinifera), 5'ss of exon 24
GGAAAAATCATTATTGATGGTTGTGATATTTCTACATTCGGATTAGAAGATGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgtattttccatgaacagaattcttgttctgtgctaaattagacaaccaaatatgagtttgattttaatctgctgttacgaatgtttttatat-tgtaattg--
|||| |||    || ||||  | ||| ||| | | ||| ||| |   |||| | || |||||| | |  || |||||||||||||||||||||||||||||||      ||   | |   |    ||   | ||| |       | ||  | | ||    |  |  || |||| |  |  ||| ||| | || |||  ||   
GGAAGAATATGGATAGATGAGTATGACATTGCAAAATTTGGACTCACAGATCTGCGTAAAGTTTTAAGCATTATACCACAATCTCCAGTTCTTTTCTCTGgtaagcattatctgctg--ctaggttttcttactataactattgagcattttttaggcacaactgcat-tgctctatctgatgatttaacatatgtccttttc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22524594|gb|BU083405.1|BU083405
EST:     TGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTG                         GAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACC
genomic: TGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgtattttcca ... tttctcttagGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACC
EST: gi|22522303|gb|BU081114.1|BU081114
EST:     TGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTG                         GAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACC
genomic: TGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgtattttcca ... tttctcttagGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACC
EST: gi|9902417|gb|BE611385.1|BE611385
EST:     GTTCGAAAAGTTCTTACTATTATACTCACAATCTCCAGTTCTTTTCTCTG                         GAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATTCTGACC
genomic: GTTCGAAAAGTTCTTACTATCATAC-CACAATCTCCAGTTCTTTTCTCTGgtattttcca ... tttctcttagGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACC
EST: gi|22524556|gb|BU083367.1|BU083367
EST:     TGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTG                         GAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACC
genomic: TGTTCGAAAAGTTCTTACTATCATACCACAATCTCCAGTTCTTTTCTCTGgtattttcca ... tttctcttagGAACTGTTCGTTTCAATCTTGATCCATTTAATGAACACAATGATGCTGACC