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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcattagtggtaaaaatttaattagatattagttgttgcatgccataactctaatgggaaacttcactttaatatgctatag

Basic information

species Glycine max
transcript GLYMA02G42560.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 2
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcattagtggtaaaa-atttaattagatattagttgttgcatgccataactctaatgggaaacttcactttaatatgctatag------------
||||||||| ||| |||||||||| ||||| ||||||||| | ||||| || |||||||||||| | || ||| |  | ||||| ||||| ||||| |||||  |    | | ||| ||   ||||  ||||       |   |  | ||| |   || |||      |   |  ||| | |  | | |            
TCACTTCTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatggaaatttatttccttagcgcactttgaatagaagccctgtttcaaattccttccaaaatcttactgtcttgttgctctttggacag

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 2
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcattagtggtaaaaatttaattagatattagttgttgcatgccataactctaatgggaaacttcactttaatatgctatag---------------------
||||||||| ||| | |||||||| ||||| ||||||||| | ||||| || |||||||||||| | || ||| |  | ||||| ||||| ||||| |||||  |  |||  |   | |||||||| ||   ||       ||| ||   |   || |  |   |  | |  |   || ||   |                        
TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttag--catctg-aatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacag

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G057576_T01 (Zea mays), 5'ss of exon 24
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcattagtggtaaaaatttaattagatattagttgttgcat----gccataactctaat------gggaaacttcact-ttaatatgctatag----
|||||| ||  || |||||||||| ||||| ||||||||| | || ||||| |||||||||||| | || ||  |    ||||| ||||| ||||| |||||  |  |||  |   | ||||| || |     | |     ||| ||    ||| |   || | |         |||  | | | ||  |   || | |    
TCACTTTTATCTGCAAGAGCATCCTGATCTCATCAATGATATGCTAAACGTGCTTGCACTTCGTTTAGATCACACCATAGTTGTAGACATAATGCGCAAGgttag--catctg-attgaaaatctattcctgcagtgcactttgaatagaagccctgtttcaattccgtcccaaaaatctgattcttgttgctctttggacag

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM2G395549_T01 (Zea mays), 5'ss of exon 10
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcattagtggtaaaaatttaattagatattagttgttgcat---------gccataactctaatgggaaacttcact-ttaatatgctatag-------------------------------------------------------------------------------------------------------
||| || || ||| |||||||||| ||||| ||||||||| | || ||||| |||||||||||| | || ||  |  | ||||| ||||| ||||| |||||| |  |||  |   | ||||| || ||    | |     ||| ||         |    || ||       |||  | | | ||  |   || | |                                                                                                       
TCAGTTTTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTAAACGTGCTTGCACTTCGTTTAGATCACACCAGAGTTGTAGACATAATGCGCAAGgtaag--catctg-attgaaaatctatttctgcagtgcactttgaatagaagccctgtttcaattcctcccaaaaatctgattcttgttgctctttggacaggctggtcagttgcatcttgtgaaaccatatatggttgcaattcagagtaacaatgtctctgccatgaatggagccttgaatgagctttatgtctgagag

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 25
lower sequence: AT3G08530.1 (Arabidopsis thaliana), 5'ss of exon 25
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcattagtggtaaaa--atttaattagatattagttgttgcatgccataactctaatgggaaacttcactttaatatgctatag
 |||||||||||| |||||||||| ||| | ||||| ||| |||| ||||| |||||  | ||  | |||||| | ||||||||||| || |||||||||||  ||   | | || | |     |||  ||  |||  |     ||     ||| ||| |||        |||  | | || |       
GCACTTCTACTTGCAAGAGCATCCGGATATAATCAACGATCTTCTCAACGTACTTGCGTTGCGGTTAGACCATACTCGTGTTGTTGATATAATGCGGAAGgttagaagctgactgatgactttgtttttttctataaaaacaactgagctacattact-taacaattggtttc-ttctgatctcag----

upper sequence: GLYMA02G42560.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
TCACTTCTACTTGGAAGAGCATCCAGATCTTATCAATGATGTTCTGAACGTCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcattagtggtaaaaatttaattagatattagttgtt------gcatgccataactctaatgggaaacttca--ctttaatatgctatag----------------------------
 ||||| |||||| |||||||||| ||||| || |||||| |||| || || ||||||||||| || |||||| | ||||| |||||||| |||||||||||    |  || ||| |     |||  ||   | |    |  |      | |||  |    | |  | |     |  |  | || || | || |                              
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtt--tttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9820267|gb|BE555777.1|BE555777
EST:     TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAG                         GCTGGTCACCTCCGTCTTGTGAAACCGTATATGATTGCAGTTCAAAGCAAC
genomic: TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcat ... tatgctatagGCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAAC
EST: gi|16106177|gb|BI893917.1|BI893917
EST:     TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAG                         GCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAAC
genomic: TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcat ... tatgctatagGCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAAC
EST: gi|207702695|gb|GD685719.1|GD685719
EST:     TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAG                         GCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAAC
genomic: TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcat ... tatgctatagGCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAAC
EST: gi|17023957|gb|BM094991.1|BM094991
EST:     TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAG                         GCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAAC
genomic: TCCTTGCACTTCGTGTGGACCATGCACGTGTTGTTGACATCATGCGGAAGgtaggatcat ... tatgctatagGCTGGTCACCTCCGTCTTGTGAAACCATATATGGTTGCAGTTCAAAGCAAC