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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACTTCTACTTCAAAGAGCATCCAGATGTAATAAATGATATGCTAAATGTGATTGCTCTTCGTGTGGACCATACTCGTGTAGTAGATATAATGCGGAAGgtctgcaatttcataccctattgccaaatggctacagtttcaatcttatttggagagataatttgctggtttcaaatgctattctgtaatagtattgtttgttgcttggattttttattttcag

Basic information

species Glycine max
transcript GLYMA01G38580.1
intron # 25
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 25
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 2
TCACTTCTACTTCAAAGAGCATCCAGATGTAATAAATGATATGCTAAATGTGATTGCTCTTCGTGTGGACCATACTCGTGTAGTAGATATAATGCGGAAGgtctgcaatttcataccctattgccaaatggctacagtttcaatcttatttggagagataatttgctggtttcaaatgctattctgtaatagtattgt-ttgttgcttggattttttattttcag
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TCACTTCTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatgg---------aaat--ttatttccttagcgcactttgaatagaagccctg----tttcaaattcc-ttccaaaatcttactgtcttgttgctc----tttggacag----

upper sequence: GLYMA01G38580.1 (Glycine max), 5'ss of exon 25
lower sequence: Vv06s0004g06860.t01 (Vitis vinifera), 5'ss of exon 25
TCACTTCTACTTCAAAGAGCATCCAGATGTAATAAATGATATGCTAAATGTGATTGCTCTTCGTGTGGACCATACTCGTGTAGTAGATATAATGCGGAAGgtctgca-atttcataccctattgccaaatggctacagtttcaatcttattt--ggagagataatttgctggt--ttcaaatgctattctgt-aatagtattgtttgttgcttggattttttattttcag
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GCACTTCTACCTGCAGGAACATCCTGATCTTATTAATGATCTCCTTAATGTGCTTGCTCTTCGTGTGGACCACACTCGGGTTGTTGACATAATGCGAAAGgtctgcatgtttgcttactctttatgtgatggatattgctgtgtgcttcttttagtgggaacaaatgattaaaagtttaaaaatggttttgtcaatggtatcttatgcttatgatctctttgggtttcag