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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCTGATGGCAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTAAGATGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGgtaagtttctgcccaacagatcagacctaaattttactttctattgtattaaaaattgagcatttattcaaggatgtagcattgtgaagattttcgttggtggtccatattgtgtaatactatattgcag

Basic information

species Glycine max
transcript GLYMA19G41840.1
intron # 24
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6073098|gb|AW102485.1|AW102485
EST:     GCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGT--                         G-----GTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAA
genomic: GCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGgtaagtttct ... tatattgcagGAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAA
EST: gi|14990052|gb|BI315725.1|BI315725
EST:     TGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGG                         GAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAA
genomic: TGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGgtaagtttct ... tatattgcagGAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAA
EST: gi|6726703|gb|AW311057.1|AW311057
EST:     TGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGG                         GAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAA
genomic: TGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGgtaagtttct ... tatattgcagGAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAA
EST: gi|18848884|gb|BM567995.1|BM567995
EST:     ATACTTTTCACCTGCAGCAGCTTTAAGTGG                         GAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAA
genomic: ATACTTTTCACCTGCAGCAGCTTTAAGTGGgtaagtttct ... tatattgcagGAACCAGTCTGTTTATCCTGTTGTCGTTGCGGCTCATCCACTCGAGCCCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTTCTGATGGCAACACTGGGGTTTTTGATGCCGACAGCTTGAGACTAAGATGCCGTATTGCACTATCCACATACTTTTCACCTGCAGCAGCTTTAAGTGGgtaagtttctgcccaacagatcagacctaaattttactttctattgtattaaaaattgagcatttattcaaggatgtagcattgtgaagattttcgttggtggtccatattgtgtaatactatattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT