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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGGCCTTTGAACGAAATTCCGCATATAGAGGtaatttgtgaattatttagctgaacttcttgttcttactagatgggtgcatattaaacatggagttgatgctttggcctaattgacttggttgcaaatat...

Basic information

species Glycine max
transcript GLYMA18G06770.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G06770.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv06s0004g06920.t01 (Vitis vinifera), 5'ss of exon 22
-CAGTTTTGAGGGCACTATATGCTTATTTTGCTGACAGGCCTTTGAACGAAATTCCGCATATAGAGGtaatttgtgaattatttagctgaacttcttgttcttactagatgggtgcatattaaacatggagttgatgc-tttggcctaattgacttggttgcaaatat--
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GCGGTATTGAGAGCGTTATATGCTTACTTTGCTGACAGGCCTTTGAAAGAAATCCCACACATTGAGgtaaactatggacagttaaa--aactggcacatttgaattattttgccttctcctgaaagttca--tgatccacttaactcgtctcatgaatgtgcaattggta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8669465|gb|BE190572.1|BE190572
EST:     ATATGCTTATTTTGCTGACAAGCCTTTGAACGAAATTTCGCATATAGAGG                         TTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGT
genomic: ATATGCTTATTTTGCTGACAGGCCTTTGAACGAAATTCCGCATATAGAGGtaatttgtga ... catttccaggTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGT
EST: gi|31473640|gb|CD415668.1|CD415668
EST:     CGAAATTCCGCATATAGAGG                         TTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAAG
genomic: CGAAATTCCGCATATAGAGGtaatttgtga ... catttccaggTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAAG
EST: gi|31305977|gb|CD391180.1|CD391180
EST:     ATATGCTTATTTTGCTGACAGGCCTTTGAACGAAATTCCGCATATAGAGG                         TTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAAG
genomic: ATATGCTTATTTTGCTGACAGGCCTTTGAACGAAATTCCGCATATAGAGGtaatttgtga ... catttccaggTTCCTCTTCATACGATTATTGAGATACAGATGGGAGTCACGGGTGTCCAAG