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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCATTTCTATTTACAAGAGCATCCGGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgtagcattaatactgtcaacaatttcatcttaatttttactttataacctgttttccatttcactctatgaatattttccctgtgatgtattatag

Basic information

species Glycine max
transcript GLYMA18G02960.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM5G804382_T01 (Zea mays), 5'ss of exon 2
TCATTTCTATTTACAAGAGCATCCGGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgt-agcattaatactgtcaacaatttcatcttaatttttactttataacctgttttccatttcactctatgaatattttccctgtgatgtattatag----
||| |||||||| ||||||||||| ||||| ||||||||| |  ||||||| |||||||||||| | |||||| |  | ||||| ||||| ||||| ||||| |||||    |  |  |   ||||| |        ||    || || |  | || ||  |  ||     ||| ||       || ||   | | |    
TCACTTCTATTTGCAAGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatggaaatttatttccttagcgcactttgaatagaagccctgtttcaaattccttccaaaatcttactgtcttgttgctctttggacag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 24
lower sequence: GRMZM5G822591_T01 (Zea mays), 5'ss of exon 2
TCATTTCTATTTACAAGAGCATCCGGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgt-agcattaatactgtcaacaatttcatc--ttaatttttactttataacctgttttccatttcactctatgaatattttccctg---tgatgtattatag----
||| |||||||| || |||||||| ||||| ||||||||| |  ||||||| |||||||||||| | |||||| |  | ||||| ||||| ||||| ||||| |||||    |     |   ||||| |      | |||   |  |   ||||||||| | |||  ||    || || |  | ||   || ||   | | |    
TCACTTCTATTTGCAGGAGCATCCTGATCTCATCAATGATATGCTGAATGTGCTTGCACTTCGTTTAGATCATACCAGAGTTGTAGACATAATGCGCAAGgttagcatctgaatgaaaatttatttccttagcgcactttggatagaagccctgttttcaaattccttcccccaaaatctgacttgtcttgttgctctttggacag

upper sequence: GLYMA18G02960.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv13s0067g01290.t01 (Vitis vinifera), 5'ss of exon 25
TCATTTCTATTTACAAGAGCATCCGGATCTTATCAATGATGTTTTGAATGTCCTTGCACTTCGTGTTGATCATGCACGTGTTGTTGACATCATGCGAAAGgtagc-attaatactgtcaacaatttcatcttaatttttactttataacctgttttccatttc----actctatgaa---------tattttccctgtgatgtattatag------------
 || || || || ||||||||||| ||||| || |||||| || | ||||| ||||||||||| || || ||| | ||||| |||||||| ||||| |||||     ||  | ||| |     | |   |||  || ||  | |  |   ||||     ||||    |||||   |          || | |    || |||  || |              
GCACTTTTACTTGCAAGAGCATCCTGATCTCATTAATGATCTTCTAAATGTGCTTGCACTTCGAGTAGACCATACTCGTGTGGTTGACATAATGCGGAAGgtttttgtttgtgctggcttttttgtttcctttcttcttcttctgaagtatgttacttgtttccttgactcttctagacgtttatgtactcttttggttatgcgttttttgttggattccag