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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAGgtaagctgaattttctagcaggaatttcctgtttcctattatcactgtcactgttgcttttatctttcaaaatgcatggaaaggaggtcaaaaagagctgctgtgttcttcctatgagattcttttattcaagagataaaagggtatagtgcttaaattgtgtagaataaactaatatattttattgactctgcag

Basic information

species Glycine max
transcript GLYMA17G34380.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34380.2 (Glycine max), 5'ss of exon 22
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 5'ss of exon 23
TTTCATTGGAAACCCTGGTCTTTGTGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAGgtaagctgaattttctagcaggaatttcctgtttcctattatcactgtcactgttgcttttatctttcaaaatgcatggaaaggaggtcaaaaagagc-tgctgtgttcttcctatgagattcttttattcaagagataaaagggtatagtgcttaaattgtgtagaataaactaatatattttattgactctgcag
|||||||||||| ||||||||||||||| ||||||| | ||  || ||||||   ||||  ||  |||||||||||||        ||  | ||      ||   |||   || || |     |||  || |   | | ||||||   | ||  ||   | |  ||||   | ||                                                                                                
TTTCATTGGAAATCCTGGTCTTTGTGGTTATTGGCTTAGTTCTCCATGTCATCAGGCTCATCCAACAGAGCGAGgtaattattgacttgaatcattttcctcacattttacat-ataatgaggacttatgata--agccttcaaatctcctgtgaatatgtttgaaaatgacatgac----------------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208147137|gb|GD950124.1|GD950124
EST:     TGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAG                         TTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGA
genomic: TGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAGgtaagctgaa ... gactctgcagTTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGA
EST: gi|193538892|gb|FK496378.1|FK496378
EST:     TGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAG                         TTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGA
genomic: TGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAGgtaagctgaa ... gactctgcagTTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGA
EST: gi|193372976|gb|FK336066.1|FK336066
EST:     TGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAG                         TTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGA
genomic: TGGTAATTGGCTGAATTTGCCGTGTCATGGTGCTCGCCCTTCAGAGCGAGgtaagctgaa ... gactctgcagTTACATTATCTAAGGCTGCCATTCTTGGAATTACTCTTGGTGCCCTTGTGA