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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatcttgctaataacatcgttatcttgatttcgcagaagtcacattgcgattttcctgaagctgactttatggtattgtgacag

Basic information

species Glycine max
transcript GLYMA17G02640.1
intron # 24
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193385958|gb|FK351586.1|FK351586
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GG-AAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|207791351|gb|GD760962.1|GD760962
EST:     TGACTATTTGAGCTCG                         GGGAAGAAGAAAAAGTAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: TGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|23734541|gb|BU765507.1|BU765507
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|13790494|gb|BG653094.1|BG653094
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|6718901|gb|AW306548.1|AW306548
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|208299891|gb|GE099670.1|GE099670
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|31472420|gb|CD414448.1|CD414448
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|31468447|gb|CD410475.1|CD410475
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|193645408|gb|FK590824.1|FK590824
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTT-GGGAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAA-GAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAA
EST: gi|207729464|gb|GD705932.1|GD705932
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGAACGTAATGCCCTATATTTTTCTTTGGGA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGG-ACGT-ATGCCCTATATTTTTCTTTGGGA
EST: gi|208060844|gb|GD858754.1|GD858754
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|9984215|gb|BE658323.1|BE658323
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
EST: gi|5666945|gb|AI930981.1|AI930981
EST:     CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCG                         GGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA
genomic: CATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatct ... attgtgacagGGGAAGAAGAAAAAATAAATGGACGTATGCCCTATATTTTTCTTTGGGAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGgtatatatcttgctaataacatcgttatcttgatttcgcagaagtcacattgcgattttcctgaagctgactttatggtattgtgacag

- - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA