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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGTGAAGTACTCTATAGTTGAGCGTCAAGAGAAGATAGATGAGATTATATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAATGATAGGgtgagtttttaatcaccttactgaatgttgttcaagaaatataacatgctatgttctatttttttggttgtgtatttgtgccttactggccaatggttaattggtttgaactttattattatttctggttgttatttatgcag

Basic information

species Glycine max
transcript GLYMA17G00570.1
intron # 24
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00570.1 (Glycine max), 5'ss of exon 24
lower sequence: Vv12s0035g01840.t01 (Vitis vinifera), 5'ss of exon 25
TGCTGTGAAGTACTCTATAGTTGAGCGTCAAGAGAAGATAGATGAGATTATATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAATGATAGGgtgagt--------ttttaatcaccttactg-----aatgttgttcaaga---------aatataacatgctatgttctatttttttggttgtgtatttgtgccttactgg-ccaatggt--taattggtttgaactttattattatttctggttgttat--ttatgcag
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TGCCGTAAAATATTCTATAGTTGAGCGGCCAGAGAAAATAGATGAGATCATATACCCTGAGATCTCATCATTCCTAATGCTTATTAAGGATCATGACCGGgtaaataccaaaagttctaatgctctgaaaaggaaaaatgtattttaaaaccatttcggaattttagaggtttacttcattgtttccctctttttctgtatatgttggtagattaatggtagtaattggttgccgatttattagttattctgattgccatggttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151406529|gb|EV276344.1|EV276344
EST:     TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAATGATAGG                         CATGTTAGGCGAGCTGCTGTTTTGGCTCTCAGCACATTTGCACACAATAAG
genomic: TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAATGATAGGgtgagttttt ... atttatgcagCATGTTAGGCGAGCTGCTGTTTTGGCTCTCAGCACATTTGCACACAATAAG
EST: gi|9819734|gb|BE555247.1|BE555247
EST:     TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAATGATAGG                         CATGTTAGGCGAGCTGCTGTTTTGGCTCTCAGCACATTTGCACACAATAAG
genomic: TATACCCTGAAATATCTTCATTTCTGATGCTTATCAAGGATAATGATAGGgtgagttttt ... atttatgcagCATGTTAGGCGAGCTGCTGTTTTGGCTCTCAGCACATTTGCACACAATAAG