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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCATGACCCCATCGAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacacttactaaatgtgttatattccttgttgattacatagtttcttgctgcgtttttattaaagcagttcatgctattgtggcag

Basic information

species Glycine max
transcript GLYMA15G10370.1
intron # 24
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58023312|gb|CX710053.1|CX710053
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCCCG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|5666622|gb|AI930658.1|AI930658
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GCGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCG
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCG
EST: gi|254334395|gb|GR844180.1|GR844180
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATGTGGCGTAGGATAAGTA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|213602041|gb|DB981905.1|DB981905
EST:     CTTTGAAGAAGCGCAAGCAGTTTACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGGCGGATAAGTA
genomic: CTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|57575241|gb|CX548216.1|CX548216
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|192313279|gb|FK005051.1|FK005051
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGC
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGC
EST: gi|31561349|gb|CD487187.1|CD487187
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAG--
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|4290919|gb|AI441687.1|AI441687
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|208163709|gb|GD963587.1|GD963587
EST:     CGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGG---A-TA
genomic: CGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|31476136|gb|CD418164.1|CD418164
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGG---A-TA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|22934172|gb|BU551311.1|BU551311
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|18692734|gb|BM521582.1|BM521582
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAG--
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|6847014|gb|AW349304.1|AW349304
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|214005607|gb|DB984615.1|DB984615
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
EST: gi|7589626|gb|AW705396.1|AW705396
EST:     CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACG                         GGGAAGAGAAGANAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA
genomic: CTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacac ... attgtggcagGGGAAGAGAAGAAAATAATGAACATATGCTCTATATTGCGTAGGATAAGTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCATGACCCCATCGAAGCGTGCTTTGGCAAGACAGACAGAGAGTCCATCTTCTTTGAAGAAGCGCAAGCAGTTAACCATGGACGATTATGCAAGCACGgtatgcacacttactaaatgtgttatattccttgttgattacatagtttcttgctgcgtttttattaaagcagttcatgctattgtggcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CATGGA